Epidemiological survey of PRRS and genetic variation analysis of the ORF5 gene in Shandong Province, 2020–2021

P Li, Y Shen, T Wang, J Li, Y Li, Y Zhao… - Frontiers in Veterinary …, 2022 - frontiersin.org
Since the rise of porcine reproductive and respiratory syndrome virus (PRRSV) in China,
mutations have occurred regularly. In particular, the emergence of HP-PRRSV has …

Comprehensive phylogeographic and phylodynamic analyses of global Senecavirus A

H Gao, Y Chen, X Xu, Z Xu, S Xu, J Xing, J Liu… - Frontiers in …, 2022 - frontiersin.org
Senecavirus A (SVA) is a member of the genus Senecavirus in the family Picornaviridae that
infects pigs and shows symptoms similar to foot and mouth diseases and other vesicular …

classLog: Logistic regression for the classification of genetic sequences

MA Zeller, ZW Arendsee, GJD Smith… - Frontiers in …, 2023 - frontiersin.org
Introduction Sequencing and phylogenetic classification have become a common task in
human and animal diagnostic laboratories. It is routine to sequence pathogens to identify …

Machine Learning Reveals Key Glycoprotein Mutations and Rapidly Assigns Lassa Virus Lineages

RO Daodu, JU Ulrich, D Kuehnert - bioRxiv, 2024 - biorxiv.org
Lassa fever, caused by the Lassa virus (LASV), has led to numerous fatalities in West Africa
and cases exported intercontinentally since its discovery in 1969. Currently, there are no …

Classification of group A rotavirus VP7 and VP4 genotypes using random forest

H Tran, R Friendship, Z Poljak - Frontiers in Genetics, 2023 - frontiersin.org
Introduction: Group A rotaviruses are major pathogens in causing severe diarrhea in young
children and neonates of many different species of animals worldwide and group A rotavirus …

OPEN ACCESS EDITED BY

S Gryseels, F Cerutti, OA di Savoia… - … -Sense RNA Viruses, 2024 - books.google.com
Methods: We present a machine learning logistic regression pipeline that can assign
classifications to genetic sequence data. The pipeline implements an intuitive and …

Privacy-Preserving Viral Strain Classification Through a Client-Server Application Using An Open-Source Fully Homomorphic Encryption Library

JBP Vivas - 2023 - dspace.cas.upm.edu.ph
ML techniques and outsourcing are being increasingly used by researchers in their efforts to
look into and better understand SARS-CoV-2 and combat the spread of the virus. However …