A predicted CRISPR-mediated symbiosis between uncultivated archaea

SP Esser, J Rahlff, W Zhao, M Predl, J Plewka… - Nature …, 2023 - nature.com
CRISPR–Cas systems defend prokaryotic cells from invasive DNA of viruses, plasmids and
other mobile genetic elements. Here, we show using metagenomics, metatranscriptomics …

The laurentian great lakes: A biogeochemical test bed

RW Sterner - Annual Review of Earth and Planetary Sciences, 2021 - annualreviews.org
The Laurentian Great Lakes are vast, spatially heterogeneous, and changing. Across these
hydrologically linked basins, some conditions approach biogeochemical extremes for …

Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism

LE Valentin-Alvarado, SC Fakra, AJ Probst, JR Giska… - Microbiome, 2024 - Springer
Background Biofilms in sulfide-rich springs present intricate microbial communities that play
pivotal roles in biogeochemical cycling. We studied chemoautotrophically based biofilms …

Lytic archaeal viruses infect abundant primary producers in Earth's crust

J Rahlff, V Turzynski, SP Esser, I Monsees… - Nature …, 2021 - nature.com
The continental subsurface houses a major portion of life's abundance and diversity, yet little
is known about viruses infecting microbes that reside there. Here, we use a combination of …

Microbial indicators along a metallic contamination gradient in tropical coastal sediments

VA Moreira, C Cravo-Laureau, ACB de Carvalho… - Journal of Hazardous …, 2023 - Elsevier
The structure and diversity of microbial community inhabiting coastal sediments reflect the
exposition to contaminants. Aiming to assess the changes in the microbiota from Sepetiba …

Endosymbiont genomes yield clues of tubeworm success

Y Li, MR Liles, KM Halanych - The ISME Journal, 2018 - academic.oup.com
Forty years after discovery of chemosynthetic symbiosis in the tubeworm Riftia pachyptila,
how organisms maintain their unique host–symbiont associations at the cellular level is still …

Giant sulfur bacteria (Beggiatoaceae) from sediments underlying the Benguela upwelling system host diverse microbiomes

BE Flood, DC Louw, AK Van der Plas, JV Bailey - Plos one, 2021 - journals.plos.org
Due to their lithotrophic metabolisms, morphological complexity and conspicuous
appearance, members of the Beggiatoaceae have been extensively studied for more than …

[PDF][PDF] Nitrate respiration and diel migration patterns of diatoms are linked in sediments underneath a microbial mat

E Merz, GJ Dick, D de Beer, S Grim… - Environmental …, 2021 - Wiley Online Library
Diatoms are among the few eukaryotes known to store nitrate (NO3−) and to use it as an
electron acceptor for respiration in the absence of light and O2. Using microscopy and 15N …

Metaproteogenomic profiling of chemosynthetic microbial biofilms reveals metabolic flexibility during colonization of a shallow-water gas vent

S Patwardhan, F Smedile, D Giovannelli… - Frontiers in …, 2021 - frontiersin.org
Tor Caldara is a shallow-water gas vent located in the Mediterranean Sea, with active
venting of CO2 and H2S. At Tor Caldara, filamentous microbial biofilms, mainly composed of …

Nitrogen-fixing ability and nitrogen fixation-related genes of thermophilic fermentative bacteria in the genus Caldicellulosiruptor

Y Chen, A Nishihara, S Haruta - Microbes and environments, 2021 - jstage.jst.go.jp
Fermentative nitrogen-fixing bacteria have not yet been examined in detail in thermal
environments. In the present study, we isolated the thermophilic fermentative bacterium …