A compendium of mutational cancer driver genes

F Martínez-Jiménez, F Muiños, I Sentís… - Nature Reviews …, 2020 - nature.com
A fundamental goal in cancer research is to understand the mechanisms of cell
transformation. This is key to developing more efficient cancer detection methods and …

The pancreatic cancer genome revisited

A Hayashi, J Hong… - … reviews Gastroenterology & …, 2021 - nature.com
Pancreatic cancer is a genetic disease, and the recurrent genetic alterations characteristic of
pancreatic cancer indicate the cellular processes that are targeted for malignant …

[PDF][PDF] Genomic and molecular landscape of DNA damage repair deficiency across the cancer genome atlas

TA Knijnenburg, L Wang, MT Zimmermann… - Cell reports, 2018 - cell.com
DNA damage repair (DDR) pathways modulate cancer risk, progression, and therapeutic
response. We systematically analyzed somatic alterations to provide a comprehensive view …

Genomic landscape of lung adenocarcinoma in East Asians

J Chen, H Yang, ASM Teo, LB Amer, FG Sherbaf… - Nature …, 2020 - nature.com
Lung cancer is the world's leading cause of cancer death and shows strong ancestry
disparities. By sequencing and assembling a large genomic and transcriptomic dataset of …

Integration of multiomics data with graph convolutional networks to identify new cancer genes and their associated molecular mechanisms

R Schulte-Sasse, S Budach, D Hnisz… - Nature Machine …, 2021 - nature.com
The increase in available high-throughput molecular data creates computational challenges
for the identification of cancer genes. Genetic as well as non-genetic causes contribute to …

[PDF][PDF] Comprehensive characterization of cancer driver genes and mutations

MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta… - Cell, 2018 - cell.com
Identifying molecular cancer drivers is critical for precision oncology. Multiple advanced
algorithms to identify drivers now exist, but systematic attempts to combine and optimize …

[PDF][PDF] Somatic mutational landscape of splicing factor genes and their functional consequences across 33 cancer types

M Seiler, S Peng, AA Agrawal, J Palacino, T Teng… - Cell reports, 2018 - cell.com
Hotspot mutations in splicing factor genes have been recently reported at high frequency in
hematological malignancies, suggesting the importance of RNA splicing in cancer. We …

[PDF][PDF] Perspective on oncogenic processes at the end of the beginning of cancer genomics

L Ding, MH Bailey, E Porta-Pardo, V Thorsson… - Cell, 2018 - cell.com
Summary The Cancer Genome Atlas (TCGA) has catalyzed systematic characterization of
diverse genomic alterations underlying human cancers. At this historic junction marking the …

Identification of cancer driver genes based on nucleotide context

F Dietlein, D Weghorn, A Taylor-Weiner, A Richters… - Nature …, 2020 - nature.com
Cancer genomes contain large numbers of somatic mutations but few of these mutations
drive tumor development. Current approaches either identify driver genes on the basis of …

[PDF][PDF] CRISPR-mediated base editing enables efficient disruption of eukaryotic genes through induction of STOP codons

P Billon, EE Bryant, SA Joseph, TS Nambiar… - Molecular cell, 2017 - cell.com
Standard CRISPR-mediated gene disruption strategies rely on Cas9-induced DNA double-
strand breaks (DSBs). Here, we show that CRISPR-dependent base editing efficiently …