Seeing the complete picture: proteins in top-down mass spectrometry

T Habeck, F Lermyte - Essays in Biochemistry, 2023 - portlandpress.com
Top-down protein mass spectrometry can provide unique insights into protein sequence and
structure, including precise proteoform identification and study of protein–ligand and protein …

Chromatographic separation of peptides and proteins for characterization of proteomes

Y Liang, L Zhang, Y Zhang - Chemical Communications, 2023 - pubs.rsc.org
Characterization of proteomes aims to comprehensively characterize proteins in cells or
tissues via two main strategies:(1) bottom-up strategy based on the separation and …

Expanding Orbitrap Collision Cross-Section Measurements to Native Protein Applications Through Kinetic Energy and Signal Decay Analysis

VK James, JD Sanders, K Aizikov, KL Fort… - Analytical …, 2023 - ACS Publications
The measurement of collision cross sections (CCS, σ) offers supplemental information about
sizes and conformations of ions beyond mass analysis alone. We have previously shown …

Investigating lipid transporter protein and lipid interactions using variable temperature electrospray ionization, ultraviolet photodissociation mass spectrometry, and …

VK James, BJ Voss, A Helms, MS Trent… - Analytical …, 2024 - ACS Publications
Gram-negative bacteria develop and exhibit resistance to antibiotics, owing to their highly
asymmetric outer membrane maintained by a group of six proteins comprising the Mla …

[HTML][HTML] Establishing 20S proteasome genetic, translational and post-translational status from precious biological and patient samples with top-down MS

AS Dafun, D Živković, SA Leon-Icaza, S Möller… - Cells, 2023 - mdpi.com
The mammalian 20S catalytic core of the proteasome is made of 14 different subunits (α1-7
and β1-7) but exists as different subtypes depending on the cell type. In immune cells, for …

Native mass spectrometry reveals binding interactions of SARS-CoV-2 PLpro with inhibitors and ISG15

V James, R Godula, J Perez, J Beckham, J Butalewicz… - 2024 - chemrxiv.org
Here we used native mass spectrometry (native MS) to probe a SARS-CoV protease, PLpro,
which plays critical roles in coronavirus disease by affecting viral protein production and …

Hydrophilic interaction chromatography coupled to ultraviolet photodissociation affords identification, localization, and relative quantitation of glycans on intact …

V James, AAM van der Zon, E Escobar, AFG Gargano… - 2024 - chemrxiv.org
Protein glycosylation is implicated in a wide array of diseases, yet glycoprotein analysis
remains elusive owing to the extreme heterogeneity of glycans including microheterogeneity …

[PDF][PDF] Establishing 20S Proteasome Genetic, Translational and Post-Translational Status from Precious Biological and Patient Samples with Top-Down MS. Cells …

AS Dafun, D Živkovic, SA Leon-Icaza, S Möller… - 2023 - academia.edu
The mammalian 20S catalytic core of the proteasome is made of 14 different subunits (α1-7
and β1-7) but exists as different subtypes depending on the cell type. In immune cells, for …