Genotyping‐by‐sequencing approaches to characterize crop genomes: choosing the right tool for the right application
In the last decade, the revolution in sequencing technologies has deeply impacted crop
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …
Bulked sample analysis in genetics, genomics and crop improvement
Biological assay has been based on analysis of all individuals collected from sample
populations. Bulked sample analysis (BSA), which works with selected and pooled …
populations. Bulked sample analysis (BSA), which works with selected and pooled …
Uncovering hidden variation in polyploid wheat
KV Krasileva, HA Vasquez-Gross… - Proceedings of the …, 2017 - National Acad Sciences
Comprehensive reverse genetic resources, which have been key to understanding gene
function in diploid model organisms, are missing in many polyploid crops. Young polyploid …
function in diploid model organisms, are missing in many polyploid crops. Young polyploid …
Development and validation of KASP assays for genes underpinning key economic traits in bread wheat
A Rasheed, W Wen, F Gao, S Zhai, H Jin, J Liu… - Theoretical and Applied …, 2016 - Springer
Key message We developed and validated a robust marker toolkit for high-throughput and
cost-effective screening of a large number of functional genes in wheat. Abstract Functional …
cost-effective screening of a large number of functional genes in wheat. Abstract Functional …
expVIP: a customizable RNA-seq data analysis and visualization platform
The majority of transcriptome sequencing (RNA-seq) expression studies in plants remain
underutilized and inaccessible due to the use of disparate transcriptome references and the …
underutilized and inaccessible due to the use of disparate transcriptome references and the …
BED-domain-containing immune receptors confer diverse resistance spectra to yellow rust
Crop diseases reduce wheat yields by~ 25% globally and thus pose a major threat to global
food security. Genetic resistance can reduce crop losses in the field and can be selected …
food security. Genetic resistance can reduce crop losses in the field and can be selected …
TEOSINTE BRANCHED1 Regulates Inflorescence Architecture and Development in Bread Wheat (Triticum aestivum)
LE Dixon, JR Greenwood, S Bencivenga… - The Plant …, 2018 - academic.oup.com
The flowers of major cereals are arranged on reproductive branches known as spikelets,
which group together to form an inflorescence. Diversity for inflorescence architecture has …
which group together to form an inflorescence. Diversity for inflorescence architecture has …
Fine mapping and gene cloning in the post-NGS era: advances and prospects
Improvement in traits of agronomic importance is the top breeding priority of crop
improvement programs. Majority of these agronomic traits show complex quantitative …
improvement programs. Majority of these agronomic traits show complex quantitative …
Identification of heat-tolerance QTLs and high-temperature stress-responsive genes through conventional QTL mapping, QTL-seq and RNA-seq in tomato
J Wen, F Jiang, Y Weng, M Sun, X Shi, Y Zhou, L Yu… - BMC plant biology, 2019 - Springer
Background High temperature is one of the major abiotic stresses in tomato and greatly
reduces fruit yield and quality. Identifying high-temperature stress-responsive (HSR) genes …
reduces fruit yield and quality. Identifying high-temperature stress-responsive (HSR) genes …
A rare single nucleotide variant in Pm5e confers powdery mildew resistance in common wheat
J Xie, G Guo, Y Wang, T Hu, L Wang, J Li… - New …, 2020 - Wiley Online Library
Powdery mildew poses severe threats to wheat production. The most sustainable way to
control this disease is through planting resistant cultivars. We report the map‐based cloning …
control this disease is through planting resistant cultivars. We report the map‐based cloning …