MetaCompare 2.0: Differential ranking of ecological and human health resistome risks
While numerous environmental factors contribute to the spread of antibiotic resistance
genes (ARGs), quantifying their relative contributions remains a fundamental challenge …
genes (ARGs), quantifying their relative contributions remains a fundamental challenge …
Genomic representativeness and chimerism in large collections of SAGs and MAGs of marine prokaryoplankton
Abstract Background Single amplified genomes (SAGs) and metagenome-assembled
genomes (MAGs) are the predominant sources of information about the coding potential of …
genomes (MAGs) are the predominant sources of information about the coding potential of …
Using genomics to explore the epidemiology of vancomycin resistance in a sewage system
VanHAX-mediated glycopeptide resistance has been consistently high in one of the three
main sewer systems in Copenhagen, Lynetten, for+ 20 years. To explore this for other …
main sewer systems in Copenhagen, Lynetten, for+ 20 years. To explore this for other …
[HTML][HTML] Reference-free structural variant detection in microbiomes via long-read coassembly graphs
Bacterial genome dynamics are vital for understanding the mechanisms underlying
microbial adaptation, growth, and their broader impact on host phenotype. Structural …
microbial adaptation, growth, and their broader impact on host phenotype. Structural …
Small amounts of misassembly can have disproportionate effects on pangenome-based metagenomic analyses
SN Majernik, L Beaver, PH Bradley - bioRxiv, 2024 - biorxiv.org
Individual genes from microbiomes can drive host-level phenotypes. To help identify such
candidate genes, several recent tools estimate microbial gene copy numbers directly from …
candidate genes, several recent tools estimate microbial gene copy numbers directly from …
Development and Application of Targeted DNA Sequencing Tools to Profile Microbiome-wide Antimicrobial Resistance and Pathogens of Public Health Importance
IB Slizovskiy - 2024 - search.proquest.com
Antimicrobial resistance (AMR) poses critical health challenges as drivers of frequent and
severe global outbreaks. In the US alone, AMR accounts for one infection every eleven …
severe global outbreaks. In the US alone, AMR accounts for one infection every eleven …