Semantic similarity in biomedical ontologies

C Pesquita, D Faria, AO Falcao, P Lord… - PLoS computational …, 2009 - journals.plos.org
In recent years, ontologies have become a mainstream topic in biomedical research. When
biological entities are described using a common schema, such as an ontology, they can be …

[HTML][HTML] Natural language processing methods and systems for biomedical ontology learning

K Liu, WR Hogan, RS Crowley - Journal of biomedical informatics, 2011 - Elsevier
While the biomedical informatics community widely acknowledges the utility of domain
ontologies, there remain many barriers to their effective use. One important requirement of …

[图书][B] Semantic similarity from natural language and ontology analysis

S Harispe, S Ranwez, J Montmain - 2022 - books.google.com
Artificial Intelligence federates numerous scientific fields in the aim of developing machines
able to assist human operators performing complex treatments---most of which demand high …

Semantic similarity analysis of protein data: assessment with biological features and issues

PH Guzzi, M Mina, C Guerra… - Briefings in …, 2012 - academic.oup.com
The integration of proteomics data with biological knowledge is a recent trend in
bioinformatics. A lot of biological information is available and is spread on different sources …

The Semantic Web and its applications

J Cardoso, A Sheth - Semantic Web Services, Processes and Applications, 2006 - Springer
Currently, the World Wide Web is primarily composed of documents written in HTML (Hyper
Text Markup Language), a language that is useful for publishing information. HTML is a set …

Additional gene ontology structure for improved biological reasoning

S Myhre, H Tveit, T Mollestad, A Lægreid - Bioinformatics, 2006 - academic.oup.com
Abstract Motivation: The Gene Ontology (GO) is a widely used terminology for gene product
characterization in, for example, interpretation of biology underlying microarray experiments …

From ontology to semantic similarity: calculation of ontology‐based semantic similarity

M Gan, X Dou, R Jiang - The Scientific World Journal, 2013 - Wiley Online Library
Advances in high‐throughput experimental techniques in the past decade have enabled the
explosive increase of omics data, while effective organization, interpretation, and exchange …

InfAcrOnt: calculating cross-ontology term similarities using information flow by a random walk

L Cheng, Y Jiang, H Ju, J Sun, J Peng, M Zhou, Y Hu - BMC genomics, 2018 - Springer
Background Since the establishment of the first biomedical ontology Gene Ontology (GO),
the number of biomedical ontology has increased dramatically. Nowadays over 300 …

Semantic measures for the comparison of units of language, concepts or instances from text and knowledge base analysis

S Harispe, S Ranwez, S Janaqi, J Montmain - arXiv preprint arXiv …, 2013 - arxiv.org
Semantic measures are widely used today to estimate the strength of the semantic
relationship between elements of various types: units of language (eg, words, sentences …

Ontology-based multiple choice question generation

T Alsubait, B Parsia, U Sattler - KI-Künstliche Intelligenz, 2016 - Springer
Multiple choice questions (MCQs) are considered highly useful (being easy to take or mark)
but quite difficult to create and large numbers are needed to form valid exams and …