Machine learning methods in drug discovery

L Patel, T Shukla, X Huang, DW Ussery, S Wang - Molecules, 2020 - mdpi.com
The advancements of information technology and related processing techniques have
created a fertile base for progress in many scientific fields and industries. In the fields of drug …

Evaluation guidelines for machine learning tools in the chemical sciences

A Bender, N Schneider, M Segler… - Nature Reviews …, 2022 - nature.com
Abstract Machine learning (ML) promises to tackle the grand challenges in chemistry and
speed up the generation, improvement and/or ordering of research hypotheses. Despite the …

Synthetic organic chemistry driven by artificial intelligence

AF De Almeida, R Moreira, T Rodrigues - Nature Reviews Chemistry, 2019 - nature.com
Synthetic organic chemistry underpins several areas of chemistry, including drug discovery,
chemical biology, materials science and engineering. However, the execution of complex …

Recent trends in molecular aggregates: An exploration of biomedicine

J Heo, DP Murale, HY Yoon, V Arun, S Choi, E Kim… - …, 2022 - Wiley Online Library
Molecular aggregates are receiving tremendous attention, demonstrating immense potential
for biomedical applications in vitro and in vivo. For instance, the molecular aggregates of …

Predicting drug–target binding affinity through molecule representation block based on multi-head attention and skip connection

L Zhang, CC Wang, X Chen - Briefings in Bioinformatics, 2022 - academic.oup.com
Exiting computational models for drug–target binding affinity prediction have much room for
improvement in prediction accuracy, robustness and generalization ability. Most deep …

[HTML][HTML] Using Machine Learning to make nanomaterials sustainable

JJ Scott-Fordsmand, MJB Amorim - Science of The Total Environment, 2023 - Elsevier
Sustainable development is a key challenge for contemporary human societies; failure to
achieve sustainability could threaten human survival. In this review article, we illustrate how …

Computationally guided high-throughput design of self-assembling drug nanoparticles

D Reker, Y Rybakova, AR Kirtane, R Cao… - Nature …, 2021 - nature.com
Nanoformulations of therapeutic drugs are transforming our ability to effectively deliver and
treat a myriad of conditions. Often, however, they are complex to produce and exhibit low …

Therapeutics—how to treat phase separation-associated diseases

RJ Wheeler - Emerging Topics in Life Sciences, 2020 - portlandpress.com
Liquid–liquid phase separation has drawn attention as many neurodegeneration or cancer-
associated proteins are able to form liquid membraneless compartments (condensates) by …

Allosteric antagonist modulation of TRPV2 by piperlongumine impairs glioblastoma progression

J Conde, RA Pumroy, C Baker, T Rodrigues… - ACS Central …, 2021 - ACS Publications
The use of computational tools to identify biological targets of natural products with
anticancer properties and unknown modes of action is gaining momentum. We employed …

Identifying SARS-CoV-2 antiviral compounds by screening for small molecule inhibitors of nsp13 helicase

J Zeng, F Weissmann, AP Bertolin, V Posse… - Biochemical …, 2021 - portlandpress.com
The coronavirus disease 2019 (COVID-19) pandemic, which is caused by severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), is a global public health challenge …