SELEX: Critical factors and optimization strategies for successful aptamer selection

M Kohlberger, G Gadermaier - Biotechnology and applied …, 2022 - Wiley Online Library
Within the last decade, the application range of aptamers in biochemistry and medicine has
expanded rapidly. More than just a replacement for antibodies, these intrinsically structured …

Understanding the transcriptome through RNA structure

Y Wan, M Kertesz, RC Spitale, E Segal… - Nature Reviews …, 2011 - nature.com
RNA structure is crucial for gene regulation and function. In the past, transcriptomes have
largely been parsed by primary sequences and expression levels, but it is now becoming …

Structure of telomerase with telomeric DNA

J Jiang, Y Wang, L Sušac, H Chan, R Basu, ZH Zhou… - Cell, 2018 - cell.com
Telomerase is an RNA–protein complex (RNP) that extends telomeric DNA at the 3′ ends
of chromosomes using its telomerase reverse transcriptase (TERT) and integral template …

Hierarchy of RNA functional dynamics

AM Mustoe, CL Brooks… - Annual review of …, 2014 - annualreviews.org
RNA dynamics play a fundamental role in many cellular functions. However, there is no
general framework to describe these complex processes, which typically consist of many …

Small molecule–RNA targeting: starting with the fundamentals

AE Hargrove - Chemical Communications, 2020 - pubs.rsc.org
The structural and regulatory elements in therapeutically relevant RNAs offer many
opportunities for targeting by small molecules, yet fundamental understanding of what drives …

Measuring RNA–ligand interactions with microscale thermophoresis

MH Moon, TA Hilimire, AM Sanders… - Biochemistry, 2018 - ACS Publications
In recent years, there has been dramatic growth in the study of RNA. RNA has gone from
being known as an intermediate in the central dogma of molecular biology to a molecule …

Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction

H Shi, A Rangadurai, H Abou Assi, R Roy… - Nature …, 2020 - nature.com
Biomolecules form dynamic ensembles of many inter-converting conformations which are
key for understanding how they fold and function. However, determining ensembles is …

Mg2+ Shifts Ligand-Mediated Folding of a Riboswitch from Induced-Fit to Conformational Selection

KC Suddala, J Wang, Q Hou… - Journal of the American …, 2015 - ACS Publications
Bacterial riboswitches couple small-molecule ligand binding to RNA conformational
changes that widely regulate gene expression, rendering them potential targets for antibiotic …

Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound …

KC Suddala, AJ Rinaldi, J Feng, AM Mustoe… - Nucleic acids …, 2013 - academic.oup.com
Riboswitches are structural elements in the 5′ untranslated regions of many bacterial
messenger RNAs that regulate gene expression in response to changing metabolite …

Molecular recognition and function of riboswitches

A Serganov, DJ Patel - Current opinion in structural biology, 2012 - Elsevier
Regulatory mRNAs elements termed riboswitches respond to elevated concentrations of
cellular metabolites by modulating expression of associated genes. Riboswitches attain their …