Stochastic models of intracellular transport

PC Bressloff, JM Newby - Reviews of Modern Physics, 2013 - APS
The interior of a living cell is a crowded, heterogenuous, fluctuating environment. Hence, a
major challenge in modeling intracellular transport is to analyze stochastic processes within …

Nonequilibrium steady states of matrix-product form: a solver's guide

RA Blythe, MR Evans - Journal of Physics A: Mathematical and …, 2007 - iopscience.iop.org
We consider the general problem of determining the steady state of stochastic
nonequilibrium systems such as those that have been used to model (among other things) …

[图书][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

Non-equilibrium statistical mechanics: from a paradigmatic model to biological transport

T Chou, K Mallick, RKP Zia - Reports on progress in physics, 2011 - iopscience.iop.org
Unlike equilibrium statistical mechanics, with its well-established foundations, a similar
widely accepted framework for non-equilibrium statistical mechanics (NESM) remains …

Stochastic mechano-chemical kinetics of molecular motors: a multidisciplinary enterprise from a physicist's perspective

D Chowdhury - Physics Reports, 2013 - Elsevier
A molecular motor is made of either a single macromolecule or a macromolecular complex.
Just like their macroscopic counterparts, molecular motors “transduce” input energy into …

Physics of transport and traffic phenomena in biology: from molecular motors and cells to organisms

D Chowdhury, A Schadschneider, K Nishinari - Physics of Life reviews, 2005 - Elsevier
Traffic-like collective movements are observed at almost all levels of biological systems.
Molecular motor proteins like, for example, kinesin and dynein, which are the vehicles of …

Totally asymmetric simple exclusion process with Langmuir kinetics

A Parmeggiani, T Franosch, E Frey - … Review E—Statistical, Nonlinear, and Soft …, 2004 - APS
We discuss a class of driven lattice gas obtained by coupling the one-dimensional totally
asymmetric simple exclusion process to Langmuir kinetics. In the limit where these dynamics …

Intracellular transport driven by cytoskeletal motors: General mechanisms and defects

C Appert-Rolland, M Ebbinghaus, L Santen - Physics Reports, 2015 - Elsevier
Cells are the elementary units of living organisms, which are able to carry out many vital
functions. These functions rely on active processes on a microscopic scale. Therefore, they …

Intracellular transport of single-headed molecular motors KIF1A

K Nishinari, Y Okada, A Schadschneider… - Physical review …, 2005 - APS
Motivated by experiments on single-headed kinesin KIF1A, we develop a model of
intracellular transport by interacting molecular motors. It captures explicitly not only the …

The physicist's companion to current fluctuations: one-dimensional bulk-driven lattice gases

A Lazarescu - Journal of Physics A: Mathematical and …, 2015 - iopscience.iop.org
One of the main features of statistical systems out of equilibrium is the currents they exhibit in
their stationary state: microscopic currents of probability between configurations, which …