Bacterial antisense RNAs: how many are there, and what are they doing?

MK Thomason, G Storz - Annual review of genetics, 2010 - annualreviews.org
Antisense RNAs encoded on the DNA strand opposite another gene have the potential to
form extensive base-pairing interactions with the corresponding sense RNA. Unlike other …

Regulatory RNA in bacterial pathogens

K Papenfort, J Vogel - Cell host & microbe, 2010 - cell.com
Bacteria constitute a large and diverse class of infectious agents, causing devastating
diseases in humans, animals, and plants. Our understanding of gene expression control …

Comprehensive Essentiality Analysis of the Mycobacterium tuberculosis Genome via Saturating Transposon Mutagenesis

MA DeJesus, ER Gerrick, W Xu, SW Park, JE Long… - MBio, 2017 - Am Soc Microbiol
For decades, identifying the regions of a bacterial chromosome that are necessary for
viability has relied on mapping integration sites in libraries of random transposon mutants to …

TubercuList–10 years after

JM Lew, A Kapopoulou, LM Jones, ST Cole - Tuberculosis, 2011 - Elsevier
TubercuList (http://tuberculist. epfl. ch/), the relational database that presents genome-
derived information about H37Rv, the paradigm strain of Mycobacterium tuberculosis, has …

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

Z Weinberg, JX Wang, J Bogue, J Yang, K Corbino… - Genome biology, 2010 - Springer
Abstract Background Structured noncoding RNAs perform many functions that are essential
for protein synthesis, RNA processing, and gene regulation. Structured RNAs can be …

Global Assessment of Genomic Regions Required for Growth in Mycobacterium tuberculosis

YJ Zhang, TR Ioerger, C Huttenhower, JE Long… - 2012 - journals.plos.org
Identifying genomic elements required for viability is central to our understanding of the
basic physiology of bacterial pathogens. Recently, the combination of high-density …

Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis

KB Arnvig, I Comas, NR Thomson, J Houghton… - PLoS …, 2011 - journals.plos.org
RNA sequencing provides a new perspective on the genome of Mycobacterium tuberculosis
by revealing an extensive presence of non-coding RNA, including long 5'and 3'untranslated …

The past and future of tuberculosis research

I Comas, S Gagneux - PLoS pathogens, 2009 - journals.plos.org
Renewed efforts in tuberculosis (TB) research have led to important new insights into the
biology and epidemiology of this devastating disease. Yet, in the face of the modern …

The excludon: a new concept in bacterial antisense RNA-mediated gene regulation

N Sesto, O Wurtzel, C Archambaud, R Sorek… - Nature Reviews …, 2013 - nature.com
In recent years, non-coding RNAs have emerged as key regulators of gene expression.
Among these RNAs, the antisense RNAs (asRNAs) are particularly abundant, but in most …

Bacterial sRNAs: regulation in stress

CH Hoe, CA Raabe, TS Rozhdestvensky… - International Journal of …, 2013 - Elsevier
Bacteria are often exposed to a hostile environment and have developed a plethora of
cellular processes in order to survive. A burgeoning list of small non-coding RNAs (sRNAs) …