Mechanisms and evolution of control logic in prokaryotic transcriptional regulation
SAFT van Hijum, MH Medema… - … and Molecular Biology …, 2009 - Am Soc Microbiol
SUMMARY A major part of organismal complexity and versatility of prokaryotes resides in
their ability to fine-tune gene expression to adequately respond to internal and external …
their ability to fine-tune gene expression to adequately respond to internal and external …
RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12
Genomics has set the basis for a variety of methodologies that produce high-throughput
datasets identifying the different players that define gene regulation, particularly regulation …
datasets identifying the different players that define gene regulation, particularly regulation …
RSAT 2022: regulatory sequence analysis tools
W Santana-Garcia, JA Castro-Mondragon… - Nucleic Acids …, 2022 - academic.oup.com
Abstract RSAT (Regulatory Sequence Analysis Tools) enables the detection and the
analysis of cis-regulatory elements in genomic sequences. This software suite performs (i) …
analysis of cis-regulatory elements in genomic sequences. This software suite performs (i) …
[HTML][HTML] The master regulator PhoP coordinates phosphate and nitrogen metabolism, respiration, cell differentiation and antibiotic biosynthesis: comparison in …
JF Martín, A Rodríguez-García, P Liras - The Journal of antibiotics, 2017 - nature.com
Phosphate limitation is important for production of antibiotics and other secondary
metabolites in Streptomyces. Phosphate control is mediated by the two-component system …
metabolites in Streptomyces. Phosphate control is mediated by the two-component system …
Global genomic profiling reveals an extensive p53-regulated autophagy program contributing to key p53 responses
The mechanisms by which the p53 tumor suppressor acts remain incompletely understood.
To gain new insights into p53 biology, we used high-throughput sequencing to analyze …
To gain new insights into p53 biology, we used high-throughput sequencing to analyze …
RSAT 2018: regulatory sequence analysis tools 20th anniversary
NTT Nguyen, B Contreras-Moreira… - Nucleic acids …, 2018 - academic.oup.com
Abstract RSAT (Regulatory Sequence Analysis Tools) is a suite of modular tools for the
detection and the analysis of cis-regulatory elements in genome sequences. Its main …
detection and the analysis of cis-regulatory elements in genome sequences. Its main …
Sex reversal following deletion of a single distal enhancer of Sox9
N Gonen, CR Futtner, S Wood, SA Garcia-Moreno… - Science, 2018 - science.org
Cell fate decisions require appropriate regulation of key genes. Sox9, a direct target of SRY,
is pivotal in mammalian sex determination. In vivo high-throughput chromatin accessibility …
is pivotal in mammalian sex determination. In vivo high-throughput chromatin accessibility …
RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
This article summarizes our progress with RegulonDB (http://regulondb. ccg. unam. mx/)
during the past 2 years. We have kept up-to-date the knowledge from the published …
during the past 2 years. We have kept up-to-date the knowledge from the published …
RSAT 2015: regulatory sequence analysis tools
A Medina-Rivera, M Defrance, O Sand… - Nucleic acids …, 2015 - academic.oup.com
Abstract RSAT (Regulatory Sequence Analysis Tools) is a modular software suite for the
analysis of cis-regulatory elements in genome sequences. Its main applications are (i) motif …
analysis of cis-regulatory elements in genome sequences. Its main applications are (i) motif …
[HTML][HTML] D-Glucosamine supplementation extends life span of nematodes and of ageing mice
S Weimer, J Priebs, D Kuhlow, M Groth… - Nature …, 2014 - nature.com
Abstract d-Glucosamine (GlcN) is a freely available and commonly used dietary supplement
potentially promoting cartilage health in humans, which also acts as an inhibitor of …
potentially promoting cartilage health in humans, which also acts as an inhibitor of …