Bacterial transcription terminators: the RNA 3′-end chronicles

JM Peters, AD Vangeloff, R Landick - Journal of molecular biology, 2011 - Elsevier
The process of transcription termination is essential to proper expression of bacterial genes
and, in many cases, to the regulation of bacterial gene expression. Two types of bacterial …

Non-coding RNA and its potential role in Mycobacterium tuberculosis pathogenesis

K Arnvig, D Young - RNA biology, 2012 - Taylor & Francis
It is estimated that one third of the human population is infected with Mycobacterium
tuberculosis. Efforts to understand the molecular basis of its gene regulation have been …

Functionally uncoupled transcription–translation in Bacillus subtilis

GE Johnson, JB Lalanne, ML Peters, GW Li - Nature, 2020 - nature.com
Tight coupling of transcription and translation is considered a defining feature of bacterial
gene expression,. The pioneering ribosome can both physically associate and kinetically …

Xanthomonas citri: breaking the surface

AM Brunings, DW Gabriel - Molecular plant pathology, 2003 - Wiley Online Library
SUMMARY Taxonomy: Bacteria; Proteobacteria, Gammaproteobacteria; Xanthomonadales;
Xanthomonadaceae, Xanthomonas. Microbiological properties: Gram‐negative, obligately …

WebGeSTer DB—a transcription terminator database

A Mitra, AK Kesarwani, D Pal… - Nucleic acids …, 2011 - academic.oup.com
We present WebGeSTer DB, the largest database of intrinsic transcription terminators
(http://pallab. serc. iisc. ernet. in/gester). The database comprises of a million terminators …

Premature termination of transcription is shaped by Rho and translated uORFS in Mycobacterium tuberculosis

A D'Halluin, P Polgar, T Kipkorir, Z Patel, T Cortes… - Iscience, 2023 - cell.com
Little is known about the decisions behind transcription elongation versus termination in the
human pathogen Mycobacterium tuberculosis (M. TB). By applying Term-seq to M. TB we …

Global analysis of mRNA stability in Mycobacterium tuberculosis

TR Rustad, KJ Minch, W Brabant… - Nucleic acids …, 2013 - academic.oup.com
Mycobacterium tuberculosis (MTB) is a highly successful pathogen that infects over a billion
people. As with most organisms, MTB adapts to stress by modifying its transcriptional profile …

Mycobacterial RNA polymerase requires a U-tract at intrinsic terminators and is aided by NusG at suboptimal terminators

A Czyz, RA Mooney, A Iaconi, R Landick - MBio, 2014 - Am Soc Microbiol
Intrinsic terminators, which encode GC-rich RNA hairpins followed immediately by a 7-to-9-
nucleotide (nt) U-rich “U-tract,” play principal roles of punctuating and regulating …

RNIE: genome-wide prediction of bacterial intrinsic terminators

PP Gardner, L Barquist, A Bateman… - Nucleic acids …, 2011 - academic.oup.com
Abstract Bacterial Rho-independent terminators (RITs) are important genomic landmarks
involved in gene regulation and terminating gene expression. In this investigation we …

New functional identity for the DNA uptake sequence in transformation and its presence in transcriptional terminators

OH Ambur, SA Frye, T Tønjum - Journal of bacteriology, 2007 - Am Soc Microbiol
The frequently occurring DNA uptake sequence (DUS), recognized as a 10-bp repeat, is
required for efficient genetic transformation in the human pathogens Neisseria meningitidis …