Mechanisms and consequences of subcellular RNA localization across diverse cell types
Essentially all cells contain a variety of spatially restricted regions that are important for
carrying out specialized functions. Often, these regions contain specialized transcriptomes …
carrying out specialized functions. Often, these regions contain specialized transcriptomes …
Sequence determinants for nuclear retention and cytoplasmic export of mRNAs and lncRNAs
AF Palazzo, ES Lee - Frontiers in genetics, 2018 - frontiersin.org
Eukaryotes are divided into two major compartments: the nucleus where RNA is synthesized
and processed, and the cytoplasm, where mRNA is translated into proteins. Although many …
and processed, and the cytoplasm, where mRNA is translated into proteins. Although many …
A dual protein-mRNA localization screen reveals compartmentalized translation and widespread co-translational RNA targeting
Local translation allows spatial control of gene expression. Here, we performed a dual
protein-mRNA localization screen, using smFISH on 523 human cell lines expressing GFP …
protein-mRNA localization screen, using smFISH on 523 human cell lines expressing GFP …
Profiling the polyadenylated transcriptome of extracellular vesicles with long-read nanopore sequencing
JCA Padilla, S Barutcu, L Malet… - BMC genomics, 2023 - Springer
Background While numerous studies have described the transcriptomes of extracellular
vesicles (EVs) in different cellular contexts, these efforts have typically relied on sequencing …
vesicles (EVs) in different cellular contexts, these efforts have typically relied on sequencing …
Bento: a toolkit for subcellular analysis of spatial transcriptomics data
The spatial organization of molecules in a cell is essential for their functions. While current
methods focus on discerning tissue architecture, cell–cell interactions, and spatial …
methods focus on discerning tissue architecture, cell–cell interactions, and spatial …
Clickable APEX2 probes for enhanced RNA proximity labeling in live cells
J Liang, J Han, X Gao, H Jia, R Li, ECM Tse… - Analytical …, 2023 - ACS Publications
Although APEX2-mediated proximity labeling has been extensively implemented for
studying RNA subcellular localization in live cells, the biotin-phenoxyl radical used for …
studying RNA subcellular localization in live cells, the biotin-phenoxyl radical used for …
[HTML][HTML] The RNA-binding protein Rasputin/G3BP enhances the stability and translation of its target mRNAs
Summary G3BP RNA-binding proteins are important components of stress granules (SGs).
Here, we analyze the role of the Drosophila G3BP Rasputin (RIN) in unstressed cells, where …
Here, we analyze the role of the Drosophila G3BP Rasputin (RIN) in unstressed cells, where …
The kinesin KIF1C transports APC-dependent mRNAs to cell protrusions
X Pichon, K Moissoglu, E Coleno, T Wang, A Imbert… - Rna, 2021 - rnajournal.cshlp.org
RNA localization and local translation are important for numerous cellular functions. In
mammals, a class of mRNAs localize to cytoplasmic protrusions in an APC-dependent …
mammals, a class of mRNAs localize to cytoplasmic protrusions in an APC-dependent …
Global SLAM-seq for accurate mRNA decay determination and identification of NMD targets
H Alalam, JA Zepeda-Martínez, P Sunnerhagen - RNA, 2022 - rnajournal.cshlp.org
Gene expression analysis requires accurate measurements of global RNA degradation
rates, earlier problematic with methods disruptive to cell physiology. Recently, metabolic …
rates, earlier problematic with methods disruptive to cell physiology. Recently, metabolic …
RNA transport from transcription to localized translation: a single molecule perspective
E Basyuk, F Rage, E Bertrand - RNA biology, 2021 - Taylor & Francis
Transport of mRNAs is an important step of gene expression, which brings the genetic
message from the DNA in the nucleus to a precise cytoplasmic location in a regulated …
message from the DNA in the nucleus to a precise cytoplasmic location in a regulated …