SNP discovery through next-generation sequencing and its applications
S Kumar, TW Banks, S Cloutier - Crop Breeding, 2016 - taylorfrancis.com
Molecular markers are widely used in plant genetic research and breeding. Single
Nucleotide Polymorphisms (SNPs) are currently the marker of choice due to their large …
Nucleotide Polymorphisms (SNPs) are currently the marker of choice due to their large …
Development and applications of a high throughput genotyping tool for polyploid crops: single nucleotide polymorphism (SNP) array
Polypoid species play significant roles in agriculture and food production. Many crop
species are polyploid, such as potato, wheat, strawberry, and sugarcane. Genotyping has …
species are polyploid, such as potato, wheat, strawberry, and sugarcane. Genotyping has …
Application of genomic tools in plant breeding
A M. Perez-de-Castro, S Vilanova, J Cañizares… - Current …, 2012 - benthamdirect.com
Plant breeding has been very successful in developing improved varieties using
conventional tools and methodologies. Nowadays, the availability of genomic tools and …
conventional tools and methodologies. Nowadays, the availability of genomic tools and …
Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat
M Trick, NM Adamski, SG Mugford, CC Jiang… - BMC plant biology, 2012 - Springer
Background Next generation sequencing (NGS) technologies are providing new ways to
accelerate fine-mapping and gene isolation in many species. To date, the majority of these …
accelerate fine-mapping and gene isolation in many species. To date, the majority of these …
De novo assembly and Characterisation of the Transcriptome during seed development, and generation of genic-SSR markers in Peanut (Arachis hypogaea L.)
J Zhang, S Liang, J Duan, J Wang, S Chen, Z Cheng… - BMC genomics, 2012 - Springer
Abstract Background The peanut (Arachis hypogaea L.) is an important oilseed crop in
tropical and subtropical regions of the world. However, little about the molecular biology of …
tropical and subtropical regions of the world. However, little about the molecular biology of …
Using genotyping-by-sequencing (GBS) for genomic discovery in cultivated oat
Advances in next-generation sequencing offer high-throughput and cost-effective
genotyping alternatives, including genotyping-by-sequencing (GBS). Results have shown …
genotyping alternatives, including genotyping-by-sequencing (GBS). Results have shown …
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
Background Among next generation sequence technologies, platforms such as Illumina and
SOLiD produce short reads but with higher coverage and lower cost per sequenced …
SOLiD produce short reads but with higher coverage and lower cost per sequenced …
Construction of a SNP-based genetic linkage map in cultivated peanut based on large scale marker development using next-generation double-digest restriction-site …
X Zhou, Y Xia, X Ren, Y Chen, L Huang, S Huang… - BMC genomics, 2014 - Springer
Background Cultivated peanut, or groundnut (Arachis hypogaea L.), is an important oilseed
crop with an allotetraploid genome (AABB, 2 n= 4 x= 40). In recent years, many efforts have …
crop with an allotetraploid genome (AABB, 2 n= 4 x= 40). In recent years, many efforts have …
Crops that feed the world 9. Oats-a cereal crop for human and livestock feed with industrial applications
Oats are a low input cereal widely grown across the world as both a grain and forage crop.
Significant areas of production are in Northern Europe and North America and also in China …
Significant areas of production are in Northern Europe and North America and also in China …
Oats—from farm to fork
R Menon, T Gonzalez, M Ferruzzi, E Jackson… - Advances in food and …, 2016 - Elsevier
Oats have a long history of use as human food and animal feed. From its origins in the
Fertile Crescent, the oat has adapted to a wide range of climatic conditions and geographic …
Fertile Crescent, the oat has adapted to a wide range of climatic conditions and geographic …