FiT: fiber-based tensor completion for drug repurposing

A Bumin, A Ritz, D Slonim, T Kahveci… - Proceedings of the 13th …, 2022 - dl.acm.org
Drug repurposing aims to find new uses for existing drugs. One drug repurposing approach,
called" Connectivity Mapping," links transcriptomic profiles of drugs to profiles characterizing …

Missing value imputation in DNA microarray gene expression data: a comparative study of an improved collaborative filtering method with decision tree based …

S Saha, A Ghosh… - International Journal …, 2019 - inderscienceonline.com
DNA microarray is used to study the expression levels of thousands of genes under various
conditions simultaneously. Unfortunately, microarray experiments can generate datasets …

Efficient Stochastic Optimization Algorithms with Specific Bioinformatics Applications

A Bumin - ACM SIGBioinformatics Record, 2023 - dl.acm.org
Large scale stochastic optimization is at the core of machine learning and plays an important
role in solving optimization problems in bioinformatics. Most of the existing algorithms are …

An improved fuzzy based approach to impute missing values in DNA microarray gene expression data with collaborative filtering

S Saha, S Bandopadhyay, A Ghosh… - … on Advances in …, 2016 - ieeexplore.ieee.org
DNA microarray experiments normally generate gene expression profiles in the form of high
dimensional matrices. It may happen that DNA microarray gene expression values contain …

An improved fuzzy based missing value estimation in DNA microarray validated by gene ranking

S Saha, A Ghosh, DB Seal… - Advances in Fuzzy …, 2016 - Wiley Online Library
Most of the gene expression data analysis algorithms require the entire gene expression
matrix without any missing values. Hence, it is necessary to devise methods which would …

[图书][B] Efficient Stochastic Optimization Algorithms for Convex, Non-Convex Problems

AB Bumin - 2023 - search.proquest.com
The main research interest presented is large-scale stochastic optimization, which is at the
core of machine learning and data science. Most of the existing algorithms are based on …

An ensemble based missing value estimation in DNA microarray using artificial neural network

S Saha, S Bandopadhyay, A Ghosh… - … on Research in …, 2016 - ieeexplore.ieee.org
DNA microarrays are normally used to measure the expression values of thousands of
several genes simultaneously in the form of large matrices. This raw gene expression data …

Feature Selection with Missing Values in DNA Microarray Gene Expression Data

N Rabiei, AR Soltanian, M Farhadian, F Bahreini - 2022 - researchsquare.com
Background Imputation is one of the strategies for dealing with Missing values (MVs) in
microarray data. Employing the best subset of genes for imputation is very important. In this …

[PDF][PDF] Research Article An Improved Fuzzy Based Missing Value Estimation in DNA Microarray Validated by Gene Ranking

S Saha, A Ghosh, DB Seal, KN Dey - 2016 - academia.edu
Most of the gene expression data analysis algorithms require the entire gene expression
matrix without any missing values. Hence, it is necessary to devise methods which would …

[引用][C] Forefront of Fuzzy Logic in Data Mining: Theory, Algorithms, and Applications