[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
A practical guide to DNA metabarcoding for entomological ecologists
1. DNA metabarcoding is a cost‐effective species identification approach with great potential
to assist entomological ecologists. This review presents a practical guide to help …
to assist entomological ecologists. This review presents a practical guide to help …
Meta‐analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment
F Keck, RC Blackman, R Bossart… - Molecular …, 2022 - Wiley Online Library
DNA metabarcoding is increasingly used for the assessment of aquatic communities, and
numerous studies have investigated the consistency of this technique with traditional …
numerous studies have investigated the consistency of this technique with traditional …
MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequences
Abstract Analysis of environmental DNA is increasingly used to characterize ecological
communities, but the effectiveness of this approach depends on the accuracy of taxonomic …
communities, but the effectiveness of this approach depends on the accuracy of taxonomic …
eDNA metabarcoding as a promising conservation tool for monitoring fish diversity in a coastal wetland of the Pearl River Estuary compared to bottom trawling
The difficulty of censusing fish diversity hampers effective management and conservation in
estuarine and coastal ecosystems, especially wetland ecosystems. Improved noninvasive …
estuarine and coastal ecosystems, especially wetland ecosystems. Improved noninvasive …
Comprehensive biodiversity analysis via ultra-deep patterned flow cell technology: a case study of eDNA metabarcoding seawater
The characterization of biodiversity is a crucial element of ecological investigations as well
as environmental assessment and monitoring activities. Increasingly, amplicon-based …
as environmental assessment and monitoring activities. Increasingly, amplicon-based …
Marine biomonitoring with eDNA: Can metabarcoding of water samples cut it as a tool for surveying benthic communities?
In the marine realm, biomonitoring using environmental DNA (eDNA) of benthic
communities requires destructive direct sampling or the setting‐up of settlement structures …
communities requires destructive direct sampling or the setting‐up of settlement structures …
Metabarcoding from microbes to mammals: comprehensive bioassessment on a global scale
Global biodiversity loss is unprecedented, and threats to existing biodiversity are growing.
Given pervasive global change, a major challenge facing resource managers is a lack of …
Given pervasive global change, a major challenge facing resource managers is a lack of …
Monitoring non-indigenous species in port habitats: first application of a standardized North American protocol in the Mediterranean Sea
Baseline port monitoring for fouling communities is an essential tool to assess non-
indigenous species (NIS) introduction and spread, but a standardized and coordinated …
indigenous species (NIS) introduction and spread, but a standardized and coordinated …
Beyond the visual: using metabarcoding to characterize the hidden reef cryptobiome
In an era of coral reef degradation, our knowledge of ecological patterns in reefs is biased
towards large conspicuous organisms. The majority of biodiversity, however, inhabits small …
towards large conspicuous organisms. The majority of biodiversity, however, inhabits small …