Living with noise: on the propagation of noise from molecules to phenotype and fitness
FJ Bruggeman, B Teusink - Current Opinion in Systems Biology, 2018 - Elsevier
In single cells, all molecules fluctuate in concentration because synthesis and degradation
events occur asynchronously in a probabilistic manner. Since molecules generally influence …
events occur asynchronously in a probabilistic manner. Since molecules generally influence …
Single-cell analysis of multiple invertible promoters reveals differential inversion rates as a strong determinant of bacterial population heterogeneity
Population heterogeneity can promote bacterial fitness in response to unpredictable
environmental conditions. A major mechanism of phenotypic variability in the human gut …
environmental conditions. A major mechanism of phenotypic variability in the human gut …
Robust synthetic circuits for two-dimensional control of gene expression in yeast
Cellular phenotypes are the result of complex interactions between many components.
Understanding and predicting the system level properties of the resulting networks requires …
Understanding and predicting the system level properties of the resulting networks requires …
Effects of promoter leakage on dynamics of gene expression
L Huang, Z Yuan, P Liu, T Zhou - BMC systems biology, 2015 - Springer
Background Quantitative analysis of simple molecular networks is an important step forward
understanding fundamental intracellular processes. As network motifs occurring recurrently …
understanding fundamental intracellular processes. As network motifs occurring recurrently …
Stochastic transcriptional pulses orchestrate flagellar biosynthesis in Escherichia coli
JM Kim, M Garcia-Alcala, E Balleza, P Cluzel - Science Advances, 2020 - science.org
The classic picture of flagellum biosynthesis in Escherichia coli, inferred from population
measurements, depicts a deterministic program where promoters are sequentially up …
measurements, depicts a deterministic program where promoters are sequentially up …
Emergence of phenotype switching through continuous and discontinuous evolutionary transitions
Bacterial persistence (phenotypic tolerance to antibiotics) provides a prime example of bet-
hedging, where normally growing cells generate slow-growing but antibiotic-tolerant …
hedging, where normally growing cells generate slow-growing but antibiotic-tolerant …
Fundamental principles of energy consumption for gene expression
L Huang, Z Yuan, J Yu, T Zhou - Chaos: An Interdisciplinary Journal of …, 2015 - pubs.aip.org
How energy is consumed in gene expression is largely unknown mainly due to complexity of
non-equilibrium mechanisms affecting expression levels. Here, by analyzing a …
non-equilibrium mechanisms affecting expression levels. Here, by analyzing a …
Decomposition and tunability of expression noise in the presence of coupled feedbacks
P Liu, Z Yuan, H Wang, T Zhou - Chaos: An Interdisciplinary Journal of …, 2016 - pubs.aip.org
Expression noise results in cell-to-cell variability in expression levels, and feedback
regulation may complicate the tracing of sources of this noise. Using a representative model …
regulation may complicate the tracing of sources of this noise. Using a representative model …
Linkage-specific detection and metabolism of human milk oligosaccharides in Escherichia coli
F Enam, TJ Mansell - Cell Chemical Biology, 2018 - cell.com
Human milk oligosaccharides (HMOs) are important prebiotic complex carbohydrates with
demonstrated beneficial effects on the microbiota of neonates. However, optimization of their …
demonstrated beneficial effects on the microbiota of neonates. However, optimization of their …
Independent control of mean and noise by convolution of gene expression distributions
KP Gerhardt, SD Rao, EJ Olson, OA Igoshin… - Nature …, 2021 - nature.com
Gene expression noise can reduce cellular fitness or facilitate processes such as alternative
metabolism, antibiotic resistance, and differentiation. Unfortunately, efforts to study the …
metabolism, antibiotic resistance, and differentiation. Unfortunately, efforts to study the …