AGO, a Framework for the Reconstruction of Ancestral Syntenies and Gene Orders
Reconstructing ancestral gene orders from the genome data of extant species is an
important problem in comparative and evolutionary genomics. In a phylogenomics setting …
important problem in comparative and evolutionary genomics. In a phylogenomics setting …
Gene order phylogeny via ancestral genome reconstruction under dollo
Q Xu, D Sankoff - RECOMB International Workshop on Comparative …, 2023 - Springer
We present a proof of principle for a new kind of stepwise algorithm for unrooted binary gene-
order phylogenies. This method incorporates a simple look-ahead inspired by Dollo's law …
order phylogenies. This method incorporates a simple look-ahead inspired by Dollo's law …
[PDF][PDF] The design, implementation and application of a computational pipeline for the reconstruction of the gene order on the chromosomes of very ancient ancestral …
Q Xu - 2023 - ruor.uottawa.ca
This thesis presents a novel approach to reconstructing ancestral genomes of a number of
descendant species related by a phylogeny. Traditional methods face challenges due to …
descendant species related by a phylogeny. Traditional methods face challenges due to …