[HTML][HTML] Stressed out: Bacterial response to high salinity using compatible solute biosynthesis and uptake systems, lessons from Vibrionaceae
GJ Gregory, EF Boyd - Computational and structural biotechnology journal, 2021 - Elsevier
Bacteria have evolved mechanisms that allow them to adapt to changes in osmolarity and
some species have adapted to live optimally in high salinity environments such as in the …
some species have adapted to live optimally in high salinity environments such as in the …
Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome
Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …
The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments
Y Nishimura, S Yoshizawa - Scientific Data, 2022 - nature.com
Marine microorganisms are immensely diverse and play fundamental roles in global
geochemical cycling. Recent metagenome-assembled genome studies, with particular …
geochemical cycling. Recent metagenome-assembled genome studies, with particular …
Evaluating and improving small subunit rRNA PCR primer coverage for bacteria, archaea, and eukaryotes using metagenomes from global ocean surveys
Small subunit rRNA (SSU rRNA) amplicon sequencing can quantitatively and
comprehensively profile natural microbiomes, representing a critically important tool for …
comprehensively profile natural microbiomes, representing a critically important tool for …
Reekeekee- and roodoodooviruses, two different Microviridae clades constituted by the smallest DNA phages
Small circular single-stranded DNA viruses of the Microviridae family are both prevalent and
diverse in all ecosystems. They usually harbor a genome between 4.3 and 6.3 kb, with a …
diverse in all ecosystems. They usually harbor a genome between 4.3 and 6.3 kb, with a …
Genomes from uncultivated Pelagiphages reveal multiple phylogenetic clades exhibiting extensive auxiliary metabolic genes and cross-family multigene transfers
For the abundant marine Alphaproteobacterium Pelagibacter (SAR11), and other bacteria,
phages are powerful forces of mortality. However, little is known about the most abundant …
phages are powerful forces of mortality. However, little is known about the most abundant …
Comparative analysis of fish environmental DNA reveals higher sensitivity achieved through targeted sequence‐based metabarcoding
A McCarthy, H Rajabi, B McClenaghan… - Molecular Ecology …, 2023 - Wiley Online Library
Environmental DNA (eDNA)‐based methods of species detection are enabling various
applications in ecology and conservation including large‐scale biomonitoring efforts. qPCR …
applications in ecology and conservation including large‐scale biomonitoring efforts. qPCR …
[HTML][HTML] A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients
Hospitalized patients receiving hematopoietic cell transplants provide a unique opportunity
to study the human gut microbiome. We previously compiled a large-scale longitudinal …
to study the human gut microbiome. We previously compiled a large-scale longitudinal …
Microbiota of the Rearing Water of Penaeus stylirostris Larvae Influenced by Lagoon Seawater and Specific Key Microbial Lineages of Larval Stage and Survival
Aquacultured animals are reared in water, where they interact with microorganisms which
can be involved in their development, immunity, and disease. It is therefore interesting to …
can be involved in their development, immunity, and disease. It is therefore interesting to …
Diversity and taxonomy of soil bacterial communities in urban and rural mangrove forests of the Panama Bay
IJ Quintero, AM Castillo, LC Mejía - Microorganisms, 2022 - mdpi.com
Mangrove ecosystems are threatened worldwide by a wide range of factors including
climate change, coastal development, and pollution. The effects of these factors on soil …
climate change, coastal development, and pollution. The effects of these factors on soil …