Macromolecular room temperature crystallography
M Fischer - Quarterly Reviews of Biophysics, 2021 - cambridge.org
X-ray crystallography enables detailed structural studies of proteins to understand and
modulate their function. Conducting crystallographic experiments at cryogenic temperatures …
modulate their function. Conducting crystallographic experiments at cryogenic temperatures …
[PDF][PDF] Best practices for time-resolved serial synchrotron crystallography
EC Schulz, BA Yorke, AR Pearson… - … Section D: Structural …, 2022 - journals.iucr.org
With recent developments in X-ray sources, instrumentation and data-analysis tools, time-
resolved crystallographic experiments, which were originally the preserve of a few expert …
resolved crystallographic experiments, which were originally the preserve of a few expert …
Defining a new nomenclature for the structures of active and inactive kinases
V Modi, RL Dunbrack Jr - Proceedings of the National …, 2019 - National Acad Sciences
Targeting protein kinases is an important strategy for intervention in cancer. Inhibitors are
directed at the active conformation or a variety of inactive conformations. While attempts …
directed at the active conformation or a variety of inactive conformations. While attempts …
Temporal and spatial resolution of distal protein motions that activate hydrogen tunneling in soybean lipoxygenase
The enzyme soybean lipoxygenase (SLO) provides a prototype for deep tunneling
mechanisms in hydrogen transfer catalysis. This work combines room temperature X-ray …
mechanisms in hydrogen transfer catalysis. This work combines room temperature X-ray …
Ligand binding remodels protein side-chain conformational heterogeneity
SA Wankowicz, SH de Oliveira, DW Hogan… - Elife, 2022 - elifesciences.org
While protein conformational heterogeneity plays an important role in many aspects of
biological function, including ligand binding, its impact has been difficult to quantify …
biological function, including ligand binding, its impact has been difficult to quantify …
An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering
Allostery is an inherent feature of proteins, but it remains challenging to reveal the
mechanisms by which allosteric signals propagate. A clearer understanding of this intrinsic …
mechanisms by which allosteric signals propagate. A clearer understanding of this intrinsic …
Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography
Determining the interconverting conformations of dynamic proteins in atomic detail is a
major challenge for structural biology. Conformational heterogeneity in the active site of the …
major challenge for structural biology. Conformational heterogeneity in the active site of the …
Codon-specific Ramachandran plots show amino acid backbone conformation depends on identity of the translated codon
Synonymous codons translate into chemically identical amino acids. Once considered
inconsequential to the formation of the protein product, there is evidence to suggest that …
inconsequential to the formation of the protein product, there is evidence to suggest that …
Rescue of conformational dynamics in enzyme catalysis by directed evolution
Rational design and directed evolution have proved to be successful approaches to
increase catalytic efficiencies of both natural and artificial enzymes. Protein dynamics is …
increase catalytic efficiencies of both natural and artificial enzymes. Protein dynamics is …
Ensemble-function relationships to dissect mechanisms of enzyme catalysis
Decades of structure-function studies have established our current extensive understanding
of enzymes. However, traditional structural models are snapshots of broader conformational …
of enzymes. However, traditional structural models are snapshots of broader conformational …