Bioinformatic challenges for DNA metabarcoding of plants and animals
E Coissac, T Riaz, N Puillandre - Molecular ecology, 2012 - Wiley Online Library
Almost all empirical studies in ecology have to identify the species involved in the ecological
process under examination. DNA metabarcoding, which couples the principles of DNA …
process under examination. DNA metabarcoding, which couples the principles of DNA …
Multilocus inference of species trees and DNA barcoding
The unprecedented amount of data resulting from next-generation sequencing has opened
a new era in phylogenetic estimation. Although large datasets should, in theory, increase …
a new era in phylogenetic estimation. Although large datasets should, in theory, increase …
Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets
T Fujisawa, TG Barraclough - Systematic biology, 2013 - academic.oup.com
DNA barcoding-type studies assemble single-locus data from large samples of individuals
and species, and have provided new kinds of data for evolutionary surveys of diversity. An …
and species, and have provided new kinds of data for evolutionary surveys of diversity. An …
[图书][B] Species concepts in biology
FE Zachos - 2016 - Springer
The species problem has triggered the publication of an almost infinite number of theoretical
and practical studies, including quite a number of books. I should, therefore, perhaps briefly …
and practical studies, including quite a number of books. I should, therefore, perhaps briefly …
Guidelines for DNA taxonomy, with a focus on the meiofauna
Describing biological diversity is a challenging endeavour, especially for the small, cryptic
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …
The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna
Molecular tools have revolutionized the exploration of biodiversity, especially in organisms
for which traditional taxonomy is difficult, such as for microscopic animals (meiofauna) …
for which traditional taxonomy is difficult, such as for microscopic animals (meiofauna) …
Evaluating the Species Boundaries of Green Microalgae (Coccomyxa, Trebouxiophyceae, Chlorophyta) Using Integrative Taxonomy and DNA Barcoding with Further …
T Darienko, L Gustavs, A Eggert, W Wolf, T Proeschold - PloS one, 2015 - journals.plos.org
Integrative taxonomy is an approach for defining species and genera by taking phylogenetic,
morphological, physiological, and ecological data into account. This approach is appropriate …
morphological, physiological, and ecological data into account. This approach is appropriate …
Taxonomic resolutions based on 18S rRNA genes: a case study of subclass Copepoda
S Wu, J Xiong, Y Yu - PloS one, 2015 - journals.plos.org
Biodiversity studies are commonly conducted using 18S rRNA genes. In this study, we
compared the inter-species divergence of variable regions (V1–9) within the copepod 18S …
compared the inter-species divergence of variable regions (V1–9) within the copepod 18S …
The Longibrachiatum Clade of Trichoderma: a revision with new species
GJ Samuels, A Ismaiel, TB Mulaw, G Szakacs… - Fungal diversity, 2012 - Springer
Abstract The Longibrachiatum Clade of Trichoderma is revised. Eight new species are
described (T. aethiopicum, T. capillare, T. flagellatum, T. gillesii, T. gracile, T. pinnatum, T …
described (T. aethiopicum, T. capillare, T. flagellatum, T. gillesii, T. gracile, T. pinnatum, T …
Lack of statistical rigor in DNA barcoding likely invalidates the presence of a true species' barcode gap
DNA barcoding has been largely successful in satisfactorily exposing levels of standing
genetic diversity for a wide range of taxonomic groups through the employment of only one …
genetic diversity for a wide range of taxonomic groups through the employment of only one …