A critical review on exploiting the pharmaceutical potential of plant endophytic fungi

S Gupta, P Chaturvedi, MG Kulkarni… - Biotechnology advances, 2020 - Elsevier
The escalating demand for secondary metabolites in international markets poses a severe
threat to many plant species. An unscrupulous collection is also the immediate challenge to …

Direct delivery and fast-treated Agrobacterium co-culture (Fast-TrACC) plant transformation methods for Nicotiana benthamiana

JP Cody, MF Maher, RA Nasti, CG Starker… - Nature protocols, 2023 - nature.com
There is an expanding need to modify plant genomes to create new plant germplasm that
advances both basic and applied plant research. Most current methods for plant genome …

De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes

MB Hufford, AS Seetharam, MR Woodhouse… - Science, 2021 - science.org
We report de novo genome assemblies, transcriptomes, annotations, and methylomes for
the 26 inbreds that serve as the founders for the maize nested association mapping …

Origin of angiosperms and the puzzle of the Jurassic gap

HT Li, TS Yi, LM Gao, PF Ma, T Zhang, JB Yang… - Nature plants, 2019 - nature.com
Angiosperms are by far the most species-rich clade of land plants, but their origin and early
evolutionary history remain poorly understood. We reconstructed angiosperm phylogeny …

[HTML][HTML] An updated tribal classification of Lamiaceae based on plastome phylogenomics

F Zhao, YP Chen, Y Salmaki, BT Drew, TC Wilson… - BMC biology, 2021 - Springer
Background A robust molecular phylogeny is fundamental for developing a stable
classification and providing a solid framework to understand patterns of diversification …

[HTML][HTML] Genomic variation in 3,010 diverse accessions of Asian cultivated rice

W Wang, R Mauleon, Z Hu, D Chebotarov, S Tai, Z Wu… - Nature, 2018 - nature.com
Here we analyse genetic variation, population structure and diversity among 3,010 diverse
Asian cultivated rice (Oryza sativa L.) genomes from the 3,000 Rice Genomes Project. Our …

Construction of a chromosome-scale long-read reference genome assembly for potato

GM Pham, JP Hamilton, JC Wood, JT Burke… - …, 2020 - academic.oup.com
Background Worldwide, the cultivated potato, Solanum tuberosum L., is the No. 1 vegetable
crop and a critical food security crop. The genome sequence of DM1–3 516 R44, a doubled …

Taxon-specific, phased siRNAs underlie a speciation locus in monkeyflowers

M Liang, W Chen, AM LaFountain, Y Liu, F Peng, R Xia… - Science, 2023 - science.org
Taxon-specific small RNA loci are widespread in eukaryotic genomes, yet their role in
lineage-specific adaptation, phenotypic diversification, and speciation is poorly understood …

A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering

MG Johnson, L Pokorny, S Dodsworth… - Systematic …, 2019 - academic.oup.com
Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …

A comprehensive phylogenomic platform for exploring the angiosperm tree of life

WJ Baker, P Bailey, V Barber, A Barker… - Systematic …, 2022 - academic.oup.com
The tree of life is the fundamental biological roadmap for navigating the evolution and
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …