The bioinformatics toolbox for circRNA discovery and analysis
Circular RNAs (circRNAs) are a unique class of RNA molecule identified more than 40 years
ago which are produced by a covalent linkage via back-splicing of linear RNA. Recent …
ago which are produced by a covalent linkage via back-splicing of linear RNA. Recent …
[HTML][HTML] Analysis of transcriptome and epitranscriptome in plants using PacBio Iso-Seq and nanopore-based direct RNA sequencing
L Zhao, H Zhang, MV Kohnen, KVSK Prasad… - Frontiers in …, 2019 - frontiersin.org
Nanopore sequencing from Oxford Nanopore Technologies (ONT) and Pacific BioSciences
(PacBio) single-molecule real-time (SMRT) long-read isoform sequencing (Iso-Seq) are …
(PacBio) single-molecule real-time (SMRT) long-read isoform sequencing (Iso-Seq) are …
[HTML][HTML] Insights into the role of CircRNAs: biogenesis, characterization, functional, and clinical impact in human malignancies
Circular RNAs (circRNAs) are an evolutionarily conserved novel class of non-coding
endogenous RNAs (ncRNAs) found in the eukaryotic transcriptome, originally believed to be …
endogenous RNAs (ncRNAs) found in the eukaryotic transcriptome, originally believed to be …
[HTML][HTML] New insight into circRNAs: characterization, strategies, and biomedical applications
XY Feng, SX Zhu, KJ Pu, HJ Huang, YQ Chen… - … Hematology & Oncology, 2023 - Springer
Circular RNAs (circRNAs) are a class of covalently closed, endogenous ncRNAs. Most
circRNAs are derived from exonic or intronic sequences by precursor RNA back-splicing …
circRNAs are derived from exonic or intronic sequences by precursor RNA back-splicing …
Allele‐aware chromosome‐scale assembly of the allopolyploid genome of hexaploid Ma bamboo (Dendrocalamus latiflorus Munro)
Y Zheng, D Yang, J Rong, L Chen… - Journal of Integrative …, 2022 - Wiley Online Library
Dendrocalamus latiflorus Munro is a woody clumping bamboo with rapid shoot growth. Both
genetic transformation and clustered regularly interspaced short palindromic repeats …
genetic transformation and clustered regularly interspaced short palindromic repeats …
[HTML][HTML] Exploring the crop epigenome: a comparison of DNA methylation profiling techniques
Epigenetic modifications play a vital role in the preservation of genome integrity and in the
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …
Characterization of circular RNAs with advanced sequencing technologies in human complex diseases
Circular RNAs (circRNAs) are one category of non‐coding RNAs that do not possess 5′
caps and 3′ free ends. Instead, they are derived in closed circle forms from pre‐mRNAs by …
caps and 3′ free ends. Instead, they are derived in closed circle forms from pre‐mRNAs by …
[HTML][HTML] Transcriptome characterization of moso bamboo (Phyllostachys edulis) seedlings in response to exogenous gibberellin applications
H Zhang, H Wang, Q Zhu, Y Gao, H Wang, L Zhao… - BMC Plant …, 2018 - Springer
Abstract Background Moso bamboo (Phyllostachys edulis) is a well-known bamboo species
of high economic value in the textile industry due to its rapid growth. Phytohormones, which …
of high economic value in the textile industry due to its rapid growth. Phytohormones, which …
A global survey of the transcriptome of allopolyploid Brassica napus based on single‐molecule long‐read isoform sequencing and Illumina‐based RNA sequencing …
Brassica napus is a recent allopolyploid derived from the hybridization of Brassica rapa
(ArAr) and Brassica oleracea (CoCo). Because of the high sequence similarity between the …
(ArAr) and Brassica oleracea (CoCo). Because of the high sequence similarity between the …
Genome-Wide Profiling of Circular RNAs in the Rapidly Growing Shoots of Moso Bamboo (Phyllostachys edulis)
Y Wang, Y Gao, H Zhang, H Wang, X Liu… - Plant and Cell …, 2019 - academic.oup.com
Circular RNAs, including circular exonic RNAs (circRNA), circular intronic RNAs (ciRNA)
and exon-intron circRNAs (EIciRNAs), are a new type of noncoding RNAs. Growing shoots …
and exon-intron circRNAs (EIciRNAs), are a new type of noncoding RNAs. Growing shoots …