Oligo pools as an affordable source of synthetic DNA for cost‐effective library construction in protein‐and metabolic pathway engineering

BP Kuiper, RC Prins, S Billerbeck - ChemBioChem, 2022 - Wiley Online Library
The construction of custom libraries is critical for rational protein engineering and directed
evolution. Array‐synthesized oligo pools of thousands of user‐defined sequences (up to∼ …

Challenges and opportunities with CRISPR activation in bacteria for data-driven metabolic engineering

J Fontana, D Sparkman-Yager, JG Zalatan… - Current Opinion in …, 2020 - Elsevier
Highlights•CRISPR activation is an emerging tool for engineering bacterial metabolism.•The
promoter design rules for effective CRISPR activation in bacteria are complex.•Guide RNAs …

HEx: A heterologous expression platform for the discovery of fungal natural products

CJB Harvey, M Tang, U Schlecht, J Horecka… - Science …, 2018 - science.org
For decades, fungi have been a source of US Food and Drug Administration–approved
natural products such as penicillin, cyclosporine, and the statins. Recent breakthroughs in …

Multiplexed precision genome editing with trackable genomic barcodes in yeast

KR Roy, JD Smith, SC Vonesch, G Lin, CS Tu… - Nature …, 2018 - nature.com
Our understanding of how genotype controls phenotype is limited by the scale at which we
can precisely alter the genome and assess the phenotypic consequences of each …

Engineered production of strictosidine and analogues in yeast

J Misa, JM Billingsley, K Niwa, RK Yu… - ACS synthetic …, 2022 - ACS Publications
Monoterpene indole alkaloids (MIAs) are an expansive class of plant natural products, many
of which have been named on the World Health Organization's List of Essential Medicines …

An inducible CRISPR interference library for genetic interrogation of Saccharomyces cerevisiae biology

A Momen-Roknabadi, P Oikonomou, M Zegans… - Communications …, 2020 - nature.com
Genome-scale CRISPR interference (CRISPRi) is widely utilized to study cellular processes
in a variety of organisms. Despite the dominance of Saccharomyces cerevisiae as a model …

Engineering industrial yeast for improved tolerance and robustness

Z Wan, H Hu, K Liu, Y Qiao, F Guo… - Critical Reviews in …, 2024 - Taylor & Francis
As an important cell factory, industrial yeast has been widely used for the production of
compounds ranging from bulk chemicals to complex natural products. However, various …

[HTML][HTML] Genome-scale CRISPRi screening: a powerful tool in engineering microbiology

L Sun, P Zheng, J Sun, VF Wendisch, Y Wang - Engineering Microbiology, 2023 - Elsevier
Deciphering gene function is fundamental to engineering of microbiology. The clustered
regularly interspaced short palindromic repeats (CRISPR) system has been adapted for …

Progress in Gene Editing and Metabolic Regulation of Saccharomyces cerevisiae with CRISPR/Cas9 Tools

Y Liang, S Gao, X Qi, LN Valentovich… - ACS Synthetic …, 2024 - ACS Publications
The CRISPR/Cas9 systems have been developed as tools for genetic engineering and
metabolic engineering in various organisms. In this review, various aspects of CRISPR/Cas9 …

Design principles for nuclease-deficient CRISPR-based transcriptional regulators

MK Jensen - FEMS yeast research, 2018 - academic.oup.com
Abstract The engineering of Clustered Regularly Interspaced Short Palindromic Repeats
(CRISPR)-CRISPR-associated proteins continues to expand the toolkit available for genome …