Biophysics of protein evolution and evolutionary protein biophysics

T Sikosek, HS Chan - Journal of The Royal Society …, 2014 - royalsocietypublishing.org
The study of molecular evolution at the level of protein-coding genes often entails comparing
large datasets of sequences to infer their evolutionary relationships. Despite the importance …

Expansion and function of repeat domain proteins during stress and development in plants

M Sharma, GK Pandey - Frontiers in plant science, 2016 - frontiersin.org
The recurrent repeats having conserved stretches of amino acids exists across all domains
of life. Subsequent repetition of single sequence motif and the number and length of the …

The interface of protein structure, protein biophysics, and molecular evolution

DA Liberles, SA Teichmann, I Bahar, U Bastolla… - Protein …, 2012 - Wiley Online Library
Abstract The interface of protein structural biology, protein biophysics, molecular evolution,
and molecular population genetics forms the foundations for a mechanistic understanding of …

Mechanisms of protein evolution

V Jayaraman, S Toledo‐Patiño, L Noda‐García… - Protein …, 2022 - Wiley Online Library
How do proteins evolve? How do changes in sequence mediate changes in protein
structure, and in turn in function? This question has multiple angles, ranging from …

The UniProtKB/Swiss-Prot Tox-Prot program: a central hub of integrated venom protein data

F Jungo, L Bougueleret, I Xenarios, S Poux - Toxicon, 2012 - Elsevier
Animal toxins are of interest to a wide range of scientists, due to their numerous applications
in pharmacology, neurology, hematology, medicine, and drug research. This, and to a lesser …

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

PC Bailey, C Schudoma, W Jackson, E Baggs… - Genome biology, 2018 - Springer
Background The plant immune system is innate and encoded in the germline. Using it
efficiently, plants are capable of recognizing a diverse range of rapidly evolving pathogens …

The origin, evolution and structure of the protein world

G Caetano-Anollés, M Wang… - Biochemical …, 2009 - portlandpress.com
Contemporary protein architectures can be regarded as molecular fossils, historical imprints
that mark important milestones in the history of life. Whereas sequences change at a …

Why do eukaryotic proteins contain more intrinsically disordered regions?

W Basile, M Salvatore, C Bassot… - PLoS computational …, 2019 - journals.plos.org
Intrinsic disorder is more abundant in eukaryotic than prokaryotic proteins. Methods
predicting intrinsic disorder are based on the amino acid sequence of a protein. Therefore …

Evolutionary plasticity of insect immunity

A Vilcinskas - Journal of insect physiology, 2013 - Elsevier
Many insect genomes have been sequenced and the innate immune responses of several
species have been studied by transcriptomics, inviting the comparative analysis of immunity …

[HTML][HTML] Genomic evolution of the Coronaviridae family

CM Zmasek, EJ Lefkowitz, A Niewiadomska… - Virology, 2022 - Elsevier
The current outbreak of coronavirus disease-2019 (COVID-19) caused by SARS-CoV-2
poses unparalleled challenges to global public health. SARS-CoV-2 is a Betacoronavirus …