Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
Functional horizontal gene transfer from bacteria to eukaryotes
F Husnik, JP McCutcheon - Nature Reviews Microbiology, 2018 - nature.com
Bacteria influence eukaryotic biology as parasitic, commensal or beneficial symbionts. Aside
from these organismal interactions, bacteria have also been important sources of new …
from these organismal interactions, bacteria have also been important sources of new …
BlobToolKit–interactive quality assessment of genome assemblies
R Challis, E Richards, J Rajan… - G3: Genes …, 2020 - academic.oup.com
Reconstruction of target genomes from sequence data produced by instruments that are
agnostic as to the species-of-origin may be confounded by contaminant DNA. Whether …
agnostic as to the species-of-origin may be confounded by contaminant DNA. Whether …
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
Background The accuracy of microbial community surveys based on marker-gene and
metagenomic sequencing (MGS) suffers from the presence of contaminants—DNA …
metagenomic sequencing (MGS) suffers from the presence of contaminants—DNA …
Mirusviruses link herpesviruses to giant viruses
DNA viruses have a major influence on the ecology and evolution of cellular organisms,,–,
but their overall diversity and evolutionary trajectories remain elusive. Here we carried out a …
but their overall diversity and evolutionary trajectories remain elusive. Here we carried out a …
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes
Nitrogen fixation in the surface ocean impacts global marine nitrogen bioavailability and
thus microbial primary productivity. Until now, cyanobacterial populations have been viewed …
thus microbial primary productivity. Until now, cyanobacterial populations have been viewed …
Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
Marine planktonic eukaryotes play critical roles in global biogeochemical cycles and climate.
However, their poor representation in culture collections limits our understanding of the …
However, their poor representation in culture collections limits our understanding of the …
Accurate and complete genomes from metagenomes
Genomes are an integral component of the biological information about an organism; thus,
the more complete the genome, the more informative it is. Historically, bacterial and …
the more complete the genome, the more informative it is. Historically, bacterial and …
No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini
G Koutsovoulos, S Kumar… - Proceedings of the …, 2016 - National Acad Sciences
Tardigrades are meiofaunal ecdysozoans that are key to understanding the origins of
Arthropoda. Many species of Tardigrada can survive extreme conditions through …
Arthropoda. Many species of Tardigrada can survive extreme conditions through …