EGF receptor trafficking: consequences for signaling and cancer

A Tomas, CE Futter, ER Eden - Trends in cell biology, 2014 - cell.com
The ligand-stimulated epidermal growth factor receptor (EGFR) has been extensively
studied in the analysis of molecular mechanisms regulating endocytic traffic and the role of …

Ubiquitin-binding proteins: decoders of ubiquitin-mediated cellular functions

K Husnjak, I Dikic - Annual review of biochemistry, 2012 - annualreviews.org
Ubiquitin acts as a versatile cellular signal that controls a wide range of biological processes
including protein degradation, DNA repair, endocytosis, autophagy, transcription, immunity …

[HTML][HTML] MINDY-1 is a member of an evolutionarily conserved and structurally distinct new family of deubiquitinating enzymes

SAA Rehman, YA Kristariyanto, SY Choi, PJ Nkosi… - Molecular cell, 2016 - cell.com
Deubiquitinating enzymes (DUBs) remove ubiquitin (Ub) from Ub-conjugated substrates to
regulate the functional outcome of ubiquitylation. Here we report the discovery of a new …

Ubiquitin-binding domains—from structures to functions

I Dikic, S Wakatsuki, KJ Walters - Nature reviews Molecular cell biology, 2009 - nature.com
Ubiquitin-binding domains (UBDs) are modular elements that bind non-covalently to the
protein modifier ubiquitin. Recent atomic-level resolution structures of ubiquitin–UBD …

Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7

G Langer, SX Cohen, VS Lamzin, A Perrakis - Nature protocols, 2008 - nature.com
ARP/wARP is a software suite to build macromolecular models in X-ray crystallography
electron density maps. Structural genomics initiatives and the study of complex …

[HTML][HTML] RNF168 binds and amplifies ubiquitin conjugates on damaged chromosomes to allow accumulation of repair proteins

C Doil, N Mailand, S Bekker-Jensen, P Menard… - Cell, 2009 - cell.com
DNA double-strand breaks (DSBs) not only interrupt the genetic information, but also disrupt
the chromatin structure, and both impairments require repair mechanisms to ensure genome …

Discovery and characterization of ZUFSP/ZUP1, a distinct deubiquitinase class important for genome stability

D Kwasna, SAA Rehman, J Natarajan, S Matthews… - Molecular Cell, 2018 - cell.com
Deubiquitinating enzymes (DUBs) are important regulators of ubiquitin signaling. Here, we
report the discovery of deubiquitinating activity in ZUFSP/C6orf113. High-resolution crystal …

Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

OF Lange, NA Lakomek, C Fares, GF Schroder… - science, 2008 - science.org
Protein dynamics are essential for protein function, and yet it has been challenging to
access the underlying atomic motions in solution on nanosecond-to-microsecond time …

The RIDDLE syndrome protein mediates a ubiquitin-dependent signaling cascade at sites of DNA damage

GS Stewart, S Panier, K Townsend, AK Al-Hakim… - Cell, 2009 - cell.com
The biological response to DNA double-strand breaks acts to preserve genome integrity.
Individuals bearing inactivating mutations in components of this response exhibit clinical …

Clathrin-mediated internalization is essential for sustained EGFR signaling but dispensable for degradation

S Sigismund, E Argenzio, D Tosoni, E Cavallaro… - Developmental cell, 2008 - cell.com
Clathrin-mediated endocytosis (CME) is the major pathway of epidermal growth factor
receptor (EGFR) internalization. It is commonly believed that CME mediates long-term …