RNA sequencing: the teenage years
Over the past decade, RNA sequencing (RNA-seq) has become an indispensable tool for
transcriptome-wide analysis of differential gene expression and differential splicing of …
transcriptome-wide analysis of differential gene expression and differential splicing of …
High‐throughput metagenomics for identification of pathogens in the clinical settings
N Li, Q Cai, Q Miao, Z Song, Y Fang, B Hu - Small methods, 2021 - Wiley Online Library
The application of sequencing technology is shifting from research to clinical laboratories
owing to rapid technological developments and substantially reduced costs. However …
owing to rapid technological developments and substantially reduced costs. However …
[HTML][HTML] Computational methods for 16S metabarcoding studies using Nanopore sequencing data
Assessment of bacterial diversity through sequencing of 16S ribosomal RNA (16S rRNA)
genes has been an approach widely used in environmental microbiology, particularly since …
genes has been an approach widely used in environmental microbiology, particularly since …
Bacteriophages avoid autoimmunity from cognate immune systems as an intrinsic part of their life cycles
Dormant prophages protect lysogenic cells by expressing diverse immune systems, which
must avoid targeting their cognate prophages upon activation. Here we report that multiple …
must avoid targeting their cognate prophages upon activation. Here we report that multiple …
RNA sequencing and its applications in cancer and rare diseases
S Ergin, N Kherad, M Alagoz - Molecular Biology Reports, 2022 - Springer
With the invention of RNA sequencing over a decade ago, diagnosis and identification of the
gene-related diseases entered a new phase that enabled more accurate analysis of the …
gene-related diseases entered a new phase that enabled more accurate analysis of the …
ADAR editing in viruses: an evolutionary force to reckon with
H Piontkivska, B Wales-McGrath… - Genome biology and …, 2021 - academic.oup.com
Abstract Adenosine Deaminases that Act on RNA (ADARs) are RNA editing enzymes that
play a dynamic and nuanced role in regulating transcriptome and proteome diversity. This …
play a dynamic and nuanced role in regulating transcriptome and proteome diversity. This …
Long-read sequencing–a powerful tool in viral transcriptome research
Long-read sequencing (LRS) has become increasingly popular due to its strengths in de
novo assembly and in resolving complex DNA regions as well as in determining full-length …
novo assembly and in resolving complex DNA regions as well as in determining full-length …
Portable sequencer in the fight against infectious disease
AE Mongan, JSB Tuda, LR Runtuwene - Journal of human genetics, 2020 - nature.com
Infectious disease is still a major threat in the world today. Five decades ago, it was
considered soon to be eradicated, but the adaptation of pathogens to environmental …
considered soon to be eradicated, but the adaptation of pathogens to environmental …
Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection
N Nguyen Quang, S Goudey, E Ségéral, A Mohammad… - Retrovirology, 2020 - Springer
Background Alternative splicing is a key step in Human Immunodeficiency Virus type 1 (HIV-
1) replication that is tightly regulated both temporally and spatially. More than 50 different …
1) replication that is tightly regulated both temporally and spatially. More than 50 different …
Identification of herpesvirus transcripts from genomic regions around the replication origins
Long-read sequencing (LRS) techniques enable the identification of full-length RNA
molecules in a single run eliminating the need for additional assembly steps. LRS research …
molecules in a single run eliminating the need for additional assembly steps. LRS research …