RNA sequencing: the teenage years

R Stark, M Grzelak, J Hadfield - Nature Reviews Genetics, 2019 - nature.com
Over the past decade, RNA sequencing (RNA-seq) has become an indispensable tool for
transcriptome-wide analysis of differential gene expression and differential splicing of …

High‐throughput metagenomics for identification of pathogens in the clinical settings

N Li, Q Cai, Q Miao, Z Song, Y Fang, B Hu - Small methods, 2021 - Wiley Online Library
The application of sequencing technology is shifting from research to clinical laboratories
owing to rapid technological developments and substantially reduced costs. However …

[HTML][HTML] Computational methods for 16S metabarcoding studies using Nanopore sequencing data

A Santos, R van Aerle, L Barrientos… - Computational and …, 2020 - Elsevier
Assessment of bacterial diversity through sequencing of 16S ribosomal RNA (16S rRNA)
genes has been an approach widely used in environmental microbiology, particularly since …

Bacteriophages avoid autoimmunity from cognate immune systems as an intrinsic part of their life cycles

JT Rostøl, N Quiles-Puchalt, P Iturbe-Sanz, Í Lasa… - Nature …, 2024 - nature.com
Dormant prophages protect lysogenic cells by expressing diverse immune systems, which
must avoid targeting their cognate prophages upon activation. Here we report that multiple …

RNA sequencing and its applications in cancer and rare diseases

S Ergin, N Kherad, M Alagoz - Molecular Biology Reports, 2022 - Springer
With the invention of RNA sequencing over a decade ago, diagnosis and identification of the
gene-related diseases entered a new phase that enabled more accurate analysis of the …

ADAR editing in viruses: an evolutionary force to reckon with

H Piontkivska, B Wales-McGrath… - Genome biology and …, 2021 - academic.oup.com
Abstract Adenosine Deaminases that Act on RNA (ADARs) are RNA editing enzymes that
play a dynamic and nuanced role in regulating transcriptome and proteome diversity. This …

Long-read sequencing–a powerful tool in viral transcriptome research

Z Boldogkői, N Moldován, Z Balázs, M Snyder… - Trends in …, 2019 - cell.com
Long-read sequencing (LRS) has become increasingly popular due to its strengths in de
novo assembly and in resolving complex DNA regions as well as in determining full-length …

Portable sequencer in the fight against infectious disease

AE Mongan, JSB Tuda, LR Runtuwene - Journal of human genetics, 2020 - nature.com
Infectious disease is still a major threat in the world today. Five decades ago, it was
considered soon to be eradicated, but the adaptation of pathogens to environmental …

Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection

N Nguyen Quang, S Goudey, E Ségéral, A Mohammad… - Retrovirology, 2020 - Springer
Background Alternative splicing is a key step in Human Immunodeficiency Virus type 1 (HIV-
1) replication that is tightly regulated both temporally and spatially. More than 50 different …

Identification of herpesvirus transcripts from genomic regions around the replication origins

G Torma, D Tombácz, Z Csabai, IAA Almsarrhad… - Scientific Reports, 2023 - nature.com
Long-read sequencing (LRS) techniques enable the identification of full-length RNA
molecules in a single run eliminating the need for additional assembly steps. LRS research …