Twenty years of plant genome sequencing: achievements and challenges
Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …
reference genome, in December 2000 heralded the beginning of the plant genome era …
Plant pan-genomics and its applications
J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …
not shared among individuals. The variable DNA sequences, along with the conserved core …
[HTML][HTML] A graph-based genome and pan-genome variation of the model plant Setaria
Setaria italica (foxtail millet), a founder crop of East Asian agriculture, is a model plant for C4
photosynthesis and developing approaches to adaptive breeding across multiple climates …
photosynthesis and developing approaches to adaptive breeding across multiple climates …
GENESPACE tracks regions of interest and gene copy number variation across multiple genomes
The development of multiple chromosome-scale reference genome sequences in many
taxonomic groups has yielded a high-resolution view of the patterns and processes of …
taxonomic groups has yielded a high-resolution view of the patterns and processes of …
[HTML][HTML] Pangenomic analysis identifies structural variation associated with heat tolerance in pearl millet
Pearl millet is an important cereal crop worldwide and shows superior heat tolerance. Here,
we developed a graph-based pan-genome by assembling ten chromosomal genomes with …
we developed a graph-based pan-genome by assembling ten chromosomal genomes with …
[HTML][HTML] Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass
Long-term climate change and periodic environmental extremes threaten food and fuel
security and global crop productivity,–. Although molecular and adaptive breeding strategies …
security and global crop productivity,–. Although molecular and adaptive breeding strategies …
[HTML][HTML] An E2-E3 pair contributes to seed size control in grain crops
S Tang, Z Zhao, X Liu, Y Sui, D Zhang, H Zhi… - Nature …, 2023 - nature.com
Understanding the molecular mechanisms that regulate grain yield is important for
improving agricultural productivity. Protein ubiquitination controls various aspects of plant …
improving agricultural productivity. Protein ubiquitination controls various aspects of plant …
Current status of structural variation studies in plants
Structural variations (SVs) including gene presence/absence variations and copy number
variations are a common feature of genomes in plants and, together with single nucleotide …
variations are a common feature of genomes in plants and, together with single nucleotide …
[PDF][PDF] Multi-omics analyses of 398 foxtail millet accessions reveal genomic regions associated with domestication, metabolite traits, and anti-inflammatory effects
Foxtail millet (Setaria italica), which was domesticated from the wild species green foxtail
(Setaria viridis), is a rich source of phytonutrients for humans. To evaluate how breeding …
(Setaria viridis), is a rich source of phytonutrients for humans. To evaluate how breeding …
Integrating genomics and genome editing for orphan crop improvement: a bridge between orphan crops and modern agriculture system
H Yaqoob, A Tariq, BA Bhat, KA Bhat, IB Nehvi… - GM Crops & …, 2023 - Taylor & Francis
Domestication of orphan crops could be explored by editing their genomes. Genome editing
has a lot of promise for enhancing agricultural output, and there is a lot of interest in …
has a lot of promise for enhancing agricultural output, and there is a lot of interest in …