A meta-assembly of selection signatures in cattle
Since domestication, significant genetic improvement has been achieved for many traits of
commercial importance in cattle, including adaptation, appearance and production. In …
commercial importance in cattle, including adaptation, appearance and production. In …
[HTML][HTML] Invited review: Good practices in genome-wide association studies to identify candidate sequence variants in dairy cattle
Genotype data from dairy cattle selection programs have greatly facilitated GWAS to identify
variants related to economic traits. Results can enhance the accuracy of genomic prediction …
variants related to economic traits. Results can enhance the accuracy of genomic prediction …
Genome-wide fine-mapping identifies pleiotropic and functional variants that predict many traits across global cattle populations
The difficulty in finding causative mutations has hampered their use in genomic prediction.
Here, we present a methodology to fine-map potentially causal variants genome-wide by …
Here, we present a methodology to fine-map potentially causal variants genome-wide by …
Bovine Genome Database: new tools for gleaning function from the Bos taurus genome
We report an update of the Bovine Genome Database (BGD)(http://BovineGenome. org).
The goal of BGD is to support bovine genomics research by providing genome annotation …
The goal of BGD is to support bovine genomics research by providing genome annotation …
Runs of homozygosity and signatures of selection: a comparison among eight local Swiss sheep breeds
H Signer‐Hasler, A Burren, P Ammann… - Animal …, 2019 - Wiley Online Library
A dataset consisting of 787 animals with high‐density SNP chip genotypes (346 774 SNP s)
and 939 animals with medium‐density SNP chip genotypes (33 828 SNPs) from eight …
and 939 animals with medium‐density SNP chip genotypes (33 828 SNPs) from eight …
SNPchiMp v. 3: integrating and standardizing single nucleotide polymorphism data for livestock species
Background In recent years, the use of genomic information in livestock species for genetic
improvement, association studies and many other fields has become routine. In order to …
improvement, association studies and many other fields has become routine. In order to …
Genomic scans for selective sweeps through haplotype homozygosity and allelic fixation in 14 indigenous sheep breeds from Middle East and South Asia
The performance and productivity of livestock have consistently improved by natural and
artificial selection over the centuries. Both these selections are expected to leave patterns on …
artificial selection over the centuries. Both these selections are expected to leave patterns on …
WIDDE: a Web-Interfaced next generation database for genetic diversity exploration, with a first application in cattle
G Sempéré, K Moazami-Goudarzi, A Eggen, D Laloë… - BMC genomics, 2015 - Springer
Background The advent and democratization of next generation sequencing and genotyping
technologies lead to a huge amount of data for the characterization of population genetic …
technologies lead to a huge amount of data for the characterization of population genetic …
Sequenced-based GWAS for linear classification traits in Belgian Blue beef cattle reveals new coding variants in genes regulating body size in mammals
JL Gualdrón Duarte, C Yuan, AS Gori… - Genetics Selection …, 2023 - Springer
Background Cohorts of individuals that have been genotyped and phenotyped for genomic
selection programs offer the opportunity to better understand genetic variation associated …
selection programs offer the opportunity to better understand genetic variation associated …
Genetic diversity analyses reveal first insights into breed‐specific selection signatures within Swiss goat breeds
A Burren, M Neuditschko, H Signer‐Hasler… - Animal …, 2016 - Wiley Online Library
We used genotype data from the caprine 50k Illumina BeadChip for the assessment of
genetic diversity within and between 10 local Swiss goat breeds. Three different cluster …
genetic diversity within and between 10 local Swiss goat breeds. Three different cluster …