Computing the structural influence matrix for biological systems
We consider the problem of identifying structural influences of external inputs on steady-
state outputs in a biological network model. We speak of a structural influence if, upon a …
state outputs in a biological network model. We speak of a structural influence if, upon a …
Structural analysis in biology: A control-theoretic approach
F Blanchini, G Giordano - Automatica, 2021 - Elsevier
Despite their complexity, biological systems are able to endure huge parameter fluctuations
and survive in the most diverse environmental conditions. Mathematical tools from graph …
and survive in the most diverse environmental conditions. Mathematical tools from graph …
Unifying matrix stability concepts with a view to applications
OY Kushel - SIAM Review, 2019 - SIAM
Multiplicative and additive D-stability, diagonal stability, Schur D-stability, and H-stability are
classical concepts which arise in studying linear dynamical systems. We unify these types of …
classical concepts which arise in studying linear dynamical systems. We unify these types of …
A structural classification of candidate oscillatory and multistationary biochemical systems
Molecular systems are uncertain: The variability of reaction parameters and the presence of
unknown interactions can weaken the predictive capacity of solid mathematical models …
unknown interactions can weaken the predictive capacity of solid mathematical models …
Vertex results for the robust analysis of uncertain biochemical systems
We consider the problem of assessing the sensitivity of uncertain biochemical systems in the
presence of input perturbations (either constant or periodic) around a stable steady state. In …
presence of input perturbations (either constant or periodic) around a stable steady state. In …
Control-theoretic methods for biological networks
F Blanchini, EIS Hana, G Giordano… - 2018 IEEE conference …, 2018 - ieeexplore.ieee.org
Feedback is both a pillar of control theory and a pervasive principle of nature. For this
reason, control-theoretic methods are powerful to analyse the dynamic behaviour of …
reason, control-theoretic methods are powerful to analyse the dynamic behaviour of …
Determining the structural properties of a class of biological models
F Blanchini, E Franco… - 2012 IEEE 51st IEEE …, 2012 - ieeexplore.ieee.org
A property for a class of systems is said to be structural if it is met by any system in the class
regardless of the adopted parameters. In this paper we investigate the structural nature of …
regardless of the adopted parameters. In this paper we investigate the structural nature of …
State-dependent effective interactions in oscillator networks through coupling functions with dead zones
The dynamics of networks of interacting dynamical systems depend on the nature of the
coupling between individual units. We explore networks of oscillatory units with coupling …
coupling between individual units. We explore networks of oscillatory units with coupling …
[图书][B] Stochastic dynamics for systems biology
C Mazza, M Benaim - 2014 - api.taylorfrancis.com
This book introduces time-continuous Markov chain modelling generic stochastic dynamics
from systems biology, and shows how Markov chain models of biochemical reaction …
from systems biology, and shows how Markov chain models of biochemical reaction …
Structural analysis and control of dynamical networks
G Giordano - 2016 - air.uniud.it
A dynamical network is comprised of a finite number of subsystems, each having its own
dynamics, which interact according to a given interconnection topology. Dynamical networks …
dynamics, which interact according to a given interconnection topology. Dynamical networks …