Hot-spot analysis for drug discovery targeting protein-protein interactions

M Rosell, J Fernández-Recio - Expert opinion on drug discovery, 2018 - Taylor & Francis
Introduction: Protein-protein interactions are important for biological processes and
pathological situations, and are attractive targets for drug discovery. However, rational drug …

Mathematical and computational techniques for drug discovery: promises and developments

K Balasubramanian - Current Topics in Medicinal Chemistry, 2018 - ingentaconnect.com
We review various mathematical and computational techniques for drug discovery
exemplifying some recent works pertinent to group theory of nested structures of relevance …

Single residue modulators of amyloid formation in the N-terminal P1-region of α-synuclein

SM Ulamec, R Maya-Martinez, EJ Byrd… - Nature …, 2022 - nature.com
Alpha-synuclein (αSyn) is a protein involved in neurodegenerative disorders including
Parkinson's disease. Amyloid formation of αSyn can be modulated by the 'P1 …

[PDF][PDF] Integrative system biology and mathematical modeling of genetic networks identifies shared biomarkers for obesity and diabetes

AIH Bima, AZ Elsamanoudy, WF Albaqami… - Mathematical …, 2022 - researchgate.net
Obesity and type 2 and diabetes mellitus (T2D) are two dual epidemics whose shared
genetic pathological mechanisms are still far from being fully understood. Therefore, this …

[HTML][HTML] Experimental and computational models to understand protein-ligand, metal-ligand and metal-DNA interactions pertinent to targeted cancer and other …

VM Patil, SP Gupta, N Masand… - European Journal of …, 2024 - Elsevier
The protein-ligand interactions play critical roles in targeted therapies including viral and
cancer therapies. Hence in recent years several experimental and computational methods …

Quantum molecular dynamics, topological, group theoretical and graph theoretical studies of protein-protein interactions

K Balasubramanian, SP Gupta - Current topics in medicinal …, 2019 - ingentaconnect.com
Background: Protein-protein interactions (PPIs) are becoming increasingly important as PPIs
form the basis of multiple aggregation-related diseases such as cancer, Creutzfeldt-Jakob …

Emerging features of linear motif-binding hub proteins

N Jespersen, E Barbar - Trends in biochemical sciences, 2020 - cell.com
Hub proteins are important elements of interactomes within an organism; they bind diverse
partners, display significant pleiotropy, and connect many cellular systems. Static hubs …

Building protein-protein interaction networks for Leishmania species through protein structural information

CR dos Santos Vasconcelos, T de Lima Campos… - BMC …, 2018 - Springer
Background Systematic analysis of a parasite interactome is a key approach to understand
different biological processes. It makes possible to elucidate disease mechanisms, to predict …

Stoichiometric balance of protein copy numbers is measurable and functionally significant in a protein-protein interaction network for yeast endocytosis

DO Holland, ME Johnson - PLOS Computational Biology, 2018 - journals.plos.org
Stoichiometric balance, or dosage balance, implies that proteins that are subunits of obligate
complexes (eg the ribosome) should have copy numbers expressed to match their …

Recent advances on the network models in target-based drug discovery

W Yan, D Zhang, C Shen, Z Liang… - Current Topics in …, 2018 - ingentaconnect.com
With the advancement of “proteomics” data and systems biology, new techniques are
needed to meet the new era of drug discovery. Network theory is increasingly applied to …