Polysaccharide degradation by the Bacteroidetes: mechanisms and nomenclature

LS McKee, SL La Rosa, B Westereng… - Environmental …, 2021 - Wiley Online Library
The Bacteroidetes phylum is renowned for its ability to degrade a wide range of complex
carbohydrates, a trait that has enabled its dominance in many diverse environments. The …

Bacteroidetes bacteria in the soil: Glycan acquisition, enzyme secretion, and gliding motility

J Larsbrink, LS McKee - Advances in applied microbiology, 2020 - Elsevier
The secretion of extracellular enzymes by soil microbes is rate-limiting in the recycling of
biomass. Fungi and bacteria compete and collaborate for nutrients in the soil, with wide …

Single-pot, solid-phase-enhanced sample preparation for proteomics experiments

CS Hughes, S Moggridge, T Müller, PH Sorensen… - Nature protocols, 2019 - nature.com
A critical step in proteomics analysis is the optimal extraction and processing of protein
material to ensure the highest sensitivity in downstream detection. Achieving this requires a …

Successional action of Bacteroidota and Firmicutes in decomposing straw polymers in a paddy soil

J Huang, K Gao, L Yang, Y Lu - Environmental Microbiome, 2023 - Springer
Background Decomposition of plant biomass is vital for carbon cycling in terrestrial
ecosystems. In waterlogged soils including paddy fields and natural wetlands, plant biomass …

Lignocellulolytic systems of soil bacteria: a vast and diverse toolbox for biotechnological conversion processes

R López-Mondéjar, C Algora, P Baldrian - Biotechnology advances, 2019 - Elsevier
Lignocellulose from plant biomass represents an abundant and renewable source for the
production of environmentally friendly chemicals and biofuels. However, its recalcitrant …

[HTML][HTML] Mediators of biomass transformation–a focus on the enzyme composition of the vermicomposting process

MC Enebe, M Erasmus - Environmental Challenges, 2023 - Elsevier
Vermicomposting is a unique waste management approach for converting organic wastes
into useful and environmental friendly fertilizer. Wastes originating from farms, forests …

[HTML][HTML] Family 92 carbohydrate-binding modules specific for β-1, 6-glucans increase the thermostability of a bacterial chitinase

H Li, Z Lu, MS Hao, A Kvammen, AR Inman… - Biochimie, 2023 - Elsevier
In biomass-processing industries there is a need for enzymes that can withstand high
temperatures. Extensive research efforts have been dedicated to finding new thermostable …

Biocontrol potential of chitinases produced by newly isolated Chitinophaga sp. S167

S Sharma, S Kumar, A Khajuria, P Ohri, R Kaur… - World Journal of …, 2020 - Springer
A chitinolytic bacterium Chitinophaga sp. S167 producing extracellular chitinases was
isolated from a soil sample in India. The extracellular chitinases produced by S167 were …

Metagenomic insights into the changes in the rhizosphere microbial community caused by the root-knot nematode Meloidogyne incognita in tobacco

P Lu, H Shi, J Tao, J Jin, S Wang, Q Zheng, P Liu… - Environmental …, 2023 - Elsevier
Root-knot nematode (RKN) disease is a destructive soil disease that affects crop health and
causes huge losses in crop production. To explore the relationships between soil …

Continuous-cropping-tolerant soybean cultivars alleviate continuous cropping obstacles by improving structure and function of rhizosphere microorganisms

W Liu, N Wang, X Yao, D He, H Sun, X Ao… - Frontiers in …, 2023 - frontiersin.org
Introduction Soybean continuous cropping will change soil microorganisms and cause
continuous cropping obstacles, resulting in a significant yield decline. Different soybean …