Transcriptional network growing models using motif-based preferential attachment

AF Abdelzaher, AF Al-Musawi, P Ghosh… - … in bioengineering and …, 2015 - frontiersin.org
Understanding relationships between architectural properties of gene-regulatory networks
(GRNs) has been one of the major goals in systems biology and bioinformatics, as it can …

Transcriptional regulatory network topology with applications to bio-inspired networking: A survey

S Roy, P Ghosh, N Ghosh, SK Das - ACM Computing Surveys (CSUR), 2021 - dl.acm.org
The advent of the edge computing network paradigm places the computational and storage
resources away from the data centers and closer to the edge of the network largely …

Motifs enable communication efficiency and fault-tolerance in transcriptional networks

S Roy, P Ghosh, D Barua, SK Das - Scientific reports, 2020 - nature.com
Abstract Analysis of the topology of transcriptional regulatory networks (TRNs) is an effective
way to study the regulatory interactions between the transcription factors (TFs) and the target …

Leveraging the robustness of genetic networks: a case study on bio-inspired wireless sensor network topologies

BK Kamapantula, A Abdelzaher, P Ghosh… - Journal of Ambient …, 2014 - Springer
Wireless sensor networks (WSNs) form a critical component in modern computing
applications; given their size, ability to process and communicate information, and to sense …

Motif-role-fingerprints: the building-blocks of motifs, clustering-coefficients and transitivities in directed networks

MD McDonnell, ÖN Yaveroğlu, BA Schmerl… - PloS One, 2014 - journals.plos.org
Complex networks are frequently characterized by metrics for which particular subgraphs
are counted. One statistic from this category, which we refer to as motif-role fingerprints …

Efficient communications in wireless sensor networks based on biological robustness

A Nazi, M Raj, M Di Francesco… - … Computing in Sensor …, 2016 - ieeexplore.ieee.org
Robustness in wireless sensor networks (WSNs) is a critical factor that largely depends on
their network topology and on how devices can react to disruptions, including node and link …

[HTML][HTML] Contribution of canonical feed-forward loop motifs on the fault-tolerance and information transport efficiency of transcriptional regulatory networks

AF Abdelzaher, ML Mayo, EJ Perkins… - Nano Communication …, 2015 - Elsevier
Motifs and degree distribution in transcriptional regulatory networks play an important role
towards their fault-tolerance and efficient information transport. In this paper, we designed …

The structural role of feed-forward loop motif in transcriptional regulatory networks

BK Kamapantula, ML Mayo, EJ Perkins… - Mobile Networks and …, 2016 - Springer
We present multiple approaches to identify the significance of topological metrics that
contribute to biological network robustness. We examine and compare the communication …

[图书][B] Structure and topology of transcriptional regulatory networks and their applications in bio-inspired networking

S Roy - 2019 - search.proquest.com
Biological networks carry out vital functions necessary for sustenance despite environmental
adversities. Transcriptional Regulatory Network (TRN) is one such biological network that is …

Learning causal information flow structures in multi-layer networks

B Güler, A Yener, A Swami - 2016 IEEE Global Conference on …, 2016 - ieeexplore.ieee.org
We study causal influence structures between the patterns of a multilayer network. Multi-
layer networks are networks in which different types of activities between users represent …