Single‐cell analysis using droplet microfluidics

K Matuła, F Rivello, WTS Huck - Advanced Biosystems, 2020 - Wiley Online Library
Droplet microfluidics has revolutionized the study of single cells. The ability to
compartmentalize cells within picoliter droplets in microfluidic devices has opened up a wide …

Approximation and inference methods for stochastic biochemical kinetics—a tutorial review

D Schnoerr, G Sanguinetti… - Journal of Physics A …, 2017 - iopscience.iop.org
Stochastic fluctuations of molecule numbers are ubiquitous in biological systems. Important
examples include gene expression and enzymatic processes in living cells. Such systems …

Challenges in measuring and understanding biological noise

N Eling, MD Morgan, JC Marioni - Nature Reviews Genetics, 2019 - nature.com
Biochemical reactions are intrinsically stochastic, leading to variation in the production of
mRNAs and proteins within cells. In the scientific literature, this source of variation is typically …

Droplet microfluidics—A tool for single‐cell analysis

HN Joensson… - Angewandte Chemie …, 2012 - Wiley Online Library
Droplet microfluidics allows the isolation of single cells and reagents in monodisperse
picoliter liquid capsules and manipulations at a throughput of thousands of droplets per …

Nature, nurture, or chance: stochastic gene expression and its consequences

A Raj, A Van Oudenaarden - Cell, 2008 - cell.com
Gene expression is a fundamentally stochastic process, with randomness in transcription
and translation leading to cell-to-cell variations in mRNA and protein levels. This variation …

The ground state of embryonic stem cell self-renewal

QL Ying, J Wray, J Nichols, L Batlle-Morera, B Doble… - nature, 2008 - nature.com
In the three decades since pluripotent mouse embryonic stem (ES) cells were first described,
they have been derived and maintained by using various empirical combinations of feeder …

Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis

SL Spencer, S Gaudet, JG Albeck, JM Burke… - Nature, 2009 - nature.com
In microorganisms, noise in gene expression gives rise to cell-to-cell variability in protein
concentrations,,,,,,. In mammalian cells, protein levels also vary,, and individual cells differ …

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

JRS Newman, S Ghaemmaghami, J Ihmels… - Nature, 2006 - nature.com
A major goal of biology is to provide a quantitative description of cellular behaviour. This
task, however, has been hampered by the difficulty in measuring protein abundances and …

Bet hedging in yeast by heterogeneous, age-correlated expression of a stress protectant

SF Levy, N Ziv, ML Siegal - PLoS biology, 2012 - journals.plos.org
Genetically identical cells grown in the same culture display striking cell-to-cell
heterogeneity in gene expression and other traits. A crucial challenge is to understand how …

Noise in protein expression scales with natural protein abundance

A Bar-Even, J Paulsson, N Maheshri, M Carmi… - Nature …, 2006 - nature.com
Noise in gene expression is generated at multiple levels, such as transcription and
translation, chromatin remodeling and pathway-specific regulation. Studies of individual …