[HTML][HTML] Advances and trends in omics technology development

X Dai, L Shen - Frontiers in Medicine, 2022 - frontiersin.org
The human history has witnessed the rapid development of technologies such as high-
throughput sequencing and mass spectrometry that led to the concept of 'omics' and …

[HTML][HTML] Metabolite interactions between host and microbiota during health and disease: Which feeds the other?

Y Zhang, R Chen, DD Zhang, S Qi, Y Liu - Biomedicine & Pharmacotherapy, 2023 - Elsevier
Metabolites produced by the host and microbiota play a crucial role in how human bodies
develop and remain healthy. Most of these metabolites are produced by microbiota and …

The BioGRID interaction database: 2017 update

A Chatr-Aryamontri, R Oughtred, L Boucher… - Nucleic acids …, 2017 - academic.oup.com
Abstract The Biological General Repository for Interaction Datasets (BioGRID:
https://thebiogrid. org) is an open access database dedicated to the annotation and archival …

A map of protein-metabolite interactions reveals principles of chemical communication

I Piazza, K Kochanowski, V Cappelletti, T Fuhrer… - Cell, 2018 - cell.com
Metabolite-protein interactions control a variety of cellular processes, thereby playing a
major role in maintaining cellular homeostasis. Metabolites comprise the largest fraction of …

Phosphoinositides: tiny lipids with giant impact on cell regulation

T Balla - Physiological reviews, 2013 - journals.physiology.org
Phosphoinositides (PIs) make up only a small fraction of cellular phospholipids, yet they
control almost all aspects of a cell's life and death. These lipids gained tremendous research …

Coordination of microbial metabolism

V Chubukov, L Gerosa, K Kochanowski… - Nature Reviews …, 2014 - nature.com
Beyond fuelling cellular activities with building blocks and energy, metabolism also
integrates environmental conditions into intracellular signals. The underlying regulatory …

Trans-omics: how to reconstruct biochemical networks across multiple 'omic'layers

K Yugi, H Kubota, A Hatano, S Kuroda - Trends in biotechnology, 2016 - cell.com
We propose 'trans-omic'analysis for reconstructing global biochemical networks across
multiple omic layers by use of both multi-omic measurements and computational data …

Interactome map uncovers phosphatidylserine transport by oxysterol-binding proteins

K Maeda, K Anand, A Chiapparino, A Kumar, M Poletto… - Nature, 2013 - nature.com
The internal organization of eukaryotic cells into functionally specialized, membrane-
delimited organelles of unique composition implies a need for active, regulated lipid …

Actin and endocytosis in budding yeast

BL Goode, JA Eskin, B Wendland - Genetics, 2015 - academic.oup.com
Endocytosis, the process whereby the plasma membrane invaginates to form vesicles, is
essential for bringing many substances into the cell and for membrane turnover. The …

Plasma membrane stress induces relocalization of Slm proteins and activation of TORC2 to promote sphingolipid synthesis

D Berchtold, M Piccolis, N Chiaruttini, I Riezman… - Nature cell …, 2012 - nature.com
The plasma membrane delimits the cell, and its integrity is essential for cell survival. Lipids
and proteins form domains of distinct composition within the plasma membrane. How …