Biochemical systems theory: a review

EO Voit - International Scholarly Research Notices, 2013 - Wiley Online Library
Biochemical systems theory (BST) is the foundation for a set of analytical andmodeling tools
that facilitate the analysis of dynamic biological systems. This paper depicts major …

Simulation of prokaryotic genetic circuits

HH McAdams, A Arkin - Annual review of biophysics and …, 1998 - annualreviews.org
▪ Abstract Biochemical and genetic approaches have identified the molecular mechanisms
of many genetic reactions, particularly in bacteria. Now a comparably detailed …

[图书][B] The regulation of cellular systems

R Heinrich, S Schuster - 2012 - books.google.com
There is no doubt that nowadays, biology benefits greatly from mathematics. In particular,
cellular biology is, besides population dynamics, a field where tech niques of mathematical …

Metabolic flux distributions in Corynebacterium glutamicum during growth and lysine overproduction

JJ Vallino, G Stephanopoulos - Biotechnology and …, 2000 - Wiley Online Library
The two main contributions of this article are the solidification of Corynebacterium
glutamicum biochemistry guided by bioreaction network analysis, and the determination of …

Metabolomics‐driven quantitative analysis of ammonia assimilation in E. coli

J Yuan, CD Doucette, WU Fowler, XJ Feng… - Molecular systems …, 2009 - embopress.org
Despite extensive study of individual enzymes and their organization into pathways, the
means by which enzyme networks control metabolite concentrations and fluxes in cells …

Gene regulatory networks generating the phenomena of additivity, dominance and epistasis

SW Omholt, E Plahte, L Øyehaug, K Xiang - Genetics, 2000 - academic.oup.com
We show how the phenomena of genetic dominance, overdominance, additivity, and
epistasis are generic features of simple diploid gene regulatory networks. These regulatory …

The secant condition for instability in biochemical feedback control—I. The role of cooperativity and saturability

CD Thron - Bulletin of Mathematical Biology, 1991 - Elsevier
This paper concerns oscillations arising in a sequence of biochemical reactions S 0→ S
1↓→ S 2↓→⋯→ S n→ whose end-product inhibits the rate of the first reaction. Except for …

The best models of metabolism

EO Voit - Wiley Interdisciplinary Reviews: Systems Biology and …, 2017 - Wiley Online Library
Biochemical systems are among of the oldest application areas of mathematical modeling.
Spanning a time period of over one hundred years, the repertoire of options for structuring a …

Optimization in integrated biochemical systems

EO Voit - Biotechnology and Bioengineering, 1992 - Wiley Online Library
As of yet, steady‐state optimization in biochemical systems has been limited to a few studies
in which networks of fluxes were optimized. These networks of fluxes are represented by …

Mathematical models of purine metabolism in man

R Curto, EO Voit, A Sorribas, M Cascante - Mathematical biosciences, 1998 - Elsevier
Experimental and clinical data on purine metabolism are collated and analyzed with three
mathematical models. The first model is the result of an attempt to construct a traditional …