[HTML][HTML] Advances in CLIP technologies for studies of protein-RNA interactions

FCY Lee, J Ule - Molecular cell, 2018 - cell.com
RNA binding proteins (RBPs) regulate all aspects in the life cycle of RNA molecules. To
elucidate the elements that guide RNA specificity, regulatory mechanisms, and functions of …

Nascent RNA and the coordination of splicing with transcription

KM Neugebauer - Cold Spring Harbor Perspectives in …, 2019 - cshperspectives.cshlp.org
At each active protein-encoding gene, nascent RNA is tethered to the DNA axis by
elongating RNA polymerase II (Pol II) and is continuously altered by splicing and other …

[HTML][HTML] Regulation of co-transcriptional pre-mRNA splicing by m6A through the low-complexity protein hnRNPG

KI Zhou, H Shi, R Lyu, AC Wylder, Ż Matuszek, JN Pan… - Molecular cell, 2019 - cell.com
Summary N 6-methyladenosine (m 6 A) modification occurs co-transcriptionally and impacts
pre-mRNA processing; however, the mechanism of co-transcriptional m 6 A-dependent …

BMAL1 moonlighting as a gatekeeper for LINE1 repression and cellular senescence in primates

C Liang, Q Ke, Z Liu, J Ren, W Zhang, J Hu… - Nucleic acids …, 2022 - academic.oup.com
Aging in humans is intricately linked with alterations in circadian rhythms concomitant with
physiological decline and stem cell exhaustion. However, whether the circadian machinery …

[HTML][HTML] ORC1 binds to cis-transcribed RNAs for efficient activation of replication origins

AM Mas, E Goñi, I Ruiz de Los Mozos, A Arcas… - Nature …, 2023 - nature.com
Cells must coordinate the activation of thousands of replication origins dispersed throughout
their genome. Active transcription is known to favor the formation of mammalian origins …

Exploring the multifunctionality of SR proteins

I Slišković, H Eich… - Biochemical Society …, 2022 - portlandpress.com
Members of the arginine–serine-rich protein family (SR proteins) are multifunctional RNA-
binding proteins that have emerged as key determinants for mRNP formation, identity and …

Nuclear mechanisms of gene expression control: pre-mRNA splicing as a life or death decision

JM Gordon, DV Phizicky, KM Neugebauer - Current opinion in genetics & …, 2021 - Elsevier
Highlights•Intron retention is a widespread feature of mammalian gene expression
programs.•Retained introns are associated with post-transcriptional alternative …

PABPN1 prevents the nuclear export of an unspliced RNA with a constitutive transport element and controls human gene expression via intron retention

L Kwiatek, AM Landry-Voyer, M Latour, C Yague-Sanz… - RNA, 2023 - rnajournal.cshlp.org
Intron retention is a type of alternative splicing where one or more introns remain unspliced
in a polyadenylated transcript. Although many viral systems are known to translate proteins …

[HTML][HTML] MYC regulates a pan-cancer network of co-expressed oncogenic splicing factors

L Urbanski, M Brugiolo, SH Park, BL Angarola… - Cell reports, 2022 - cell.com
MYC is dysregulated in> 50% of cancers, but direct targeting of MYC has been clinically
unsuccessful. Targeting downstream MYC effector pathways represents an attractive …

Nuclear retention of mRNAs–quality control, gene regulation and human disease

M Wegener, M Müller-McNicoll - Seminars in Cell & Developmental …, 2018 - Elsevier
Nuclear retention of incompletely spliced or mature mRNAs emerges as a novel, previously
underappreciated layer of gene regulation, which enables the cell to rapidly respond to …