[HTML][HTML] Advances in CLIP technologies for studies of protein-RNA interactions
RNA binding proteins (RBPs) regulate all aspects in the life cycle of RNA molecules. To
elucidate the elements that guide RNA specificity, regulatory mechanisms, and functions of …
elucidate the elements that guide RNA specificity, regulatory mechanisms, and functions of …
Nascent RNA and the coordination of splicing with transcription
KM Neugebauer - Cold Spring Harbor Perspectives in …, 2019 - cshperspectives.cshlp.org
At each active protein-encoding gene, nascent RNA is tethered to the DNA axis by
elongating RNA polymerase II (Pol II) and is continuously altered by splicing and other …
elongating RNA polymerase II (Pol II) and is continuously altered by splicing and other …
[HTML][HTML] Regulation of co-transcriptional pre-mRNA splicing by m6A through the low-complexity protein hnRNPG
Summary N 6-methyladenosine (m 6 A) modification occurs co-transcriptionally and impacts
pre-mRNA processing; however, the mechanism of co-transcriptional m 6 A-dependent …
pre-mRNA processing; however, the mechanism of co-transcriptional m 6 A-dependent …
BMAL1 moonlighting as a gatekeeper for LINE1 repression and cellular senescence in primates
Aging in humans is intricately linked with alterations in circadian rhythms concomitant with
physiological decline and stem cell exhaustion. However, whether the circadian machinery …
physiological decline and stem cell exhaustion. However, whether the circadian machinery …
[HTML][HTML] ORC1 binds to cis-transcribed RNAs for efficient activation of replication origins
Cells must coordinate the activation of thousands of replication origins dispersed throughout
their genome. Active transcription is known to favor the formation of mammalian origins …
their genome. Active transcription is known to favor the formation of mammalian origins …
Exploring the multifunctionality of SR proteins
I Slišković, H Eich… - Biochemical Society …, 2022 - portlandpress.com
Members of the arginine–serine-rich protein family (SR proteins) are multifunctional RNA-
binding proteins that have emerged as key determinants for mRNP formation, identity and …
binding proteins that have emerged as key determinants for mRNP formation, identity and …
Nuclear mechanisms of gene expression control: pre-mRNA splicing as a life or death decision
JM Gordon, DV Phizicky, KM Neugebauer - Current opinion in genetics & …, 2021 - Elsevier
Highlights•Intron retention is a widespread feature of mammalian gene expression
programs.•Retained introns are associated with post-transcriptional alternative …
programs.•Retained introns are associated with post-transcriptional alternative …
PABPN1 prevents the nuclear export of an unspliced RNA with a constitutive transport element and controls human gene expression via intron retention
L Kwiatek, AM Landry-Voyer, M Latour, C Yague-Sanz… - RNA, 2023 - rnajournal.cshlp.org
Intron retention is a type of alternative splicing where one or more introns remain unspliced
in a polyadenylated transcript. Although many viral systems are known to translate proteins …
in a polyadenylated transcript. Although many viral systems are known to translate proteins …
[HTML][HTML] MYC regulates a pan-cancer network of co-expressed oncogenic splicing factors
L Urbanski, M Brugiolo, SH Park, BL Angarola… - Cell reports, 2022 - cell.com
MYC is dysregulated in> 50% of cancers, but direct targeting of MYC has been clinically
unsuccessful. Targeting downstream MYC effector pathways represents an attractive …
unsuccessful. Targeting downstream MYC effector pathways represents an attractive …
Nuclear retention of mRNAs–quality control, gene regulation and human disease
M Wegener, M Müller-McNicoll - Seminars in Cell & Developmental …, 2018 - Elsevier
Nuclear retention of incompletely spliced or mature mRNAs emerges as a novel, previously
underappreciated layer of gene regulation, which enables the cell to rapidly respond to …
underappreciated layer of gene regulation, which enables the cell to rapidly respond to …