Translation in prokaryotes

MV Rodnina - Cold Spring Harbor perspectives in …, 2018 - cshperspectives.cshlp.org
This review summarizes our current understanding of translation in prokaryotes, focusing on
the mechanistic and structural aspects of each phase of translation: initiation, elongation …

Kinetic control of translation initiation in bacteria

P Milón, MV Rodnina - Critical reviews in biochemistry and …, 2012 - Taylor & Francis
Translation initiation is a crucial step of protein synthesis which largely defines how the
composition of the cellular transcriptome is converted to the proteome and controls the …

Leaderless transcripts and small proteins are common features of the mycobacterial translational landscape

SS Shell, J Wang, P Lapierre, M Mir, MR Chase… - PLoS …, 2015 - journals.plos.org
RNA-seq technologies have provided significant insight into the transcription networks of
mycobacteria. However, such studies provide no definitive information on the translational …

Genome-wide mapping of transcriptional start sites defines an extensive leaderless transcriptome in Mycobacterium tuberculosis

T Cortes, OT Schubert, G Rose, KB Arnvig, I Comas… - Cell reports, 2013 - cell.com
Deciphering physiological changes that mediate transition of Mycobacterium tuberculosis
between replicating and nonreplicating states is essential to understanding how the …

The dynamic transcriptional and translational landscape of the model antibiotic producer Streptomyces coelicolor A3(2)

Y Jeong, JN Kim, MW Kim, G Bucca, S Cho… - Nature …, 2016 - nature.com
Individual Streptomyces species have the genetic potential to produce a diverse array of
natural products of commercial, medical and veterinary interest. However, these products …

The Pseudomonas aeruginosa Transcriptome in Planktonic Cultures and Static Biofilms Using RNA Sequencing

A Dötsch, D Eckweiler, M Schniederjans… - PloS one, 2012 - journals.plos.org
In this study, we evaluated how gene expression differs in mature Pseudomonas aeruginosa
biofilms as opposed to planktonic cells by the use of RNA sequencing technology that gives …

Isolation of fully synthetic promoters for high‐level gene expression in Corynebacterium glutamicum

SS Yim, SJ An, M Kang, J Lee… - Biotechnology and …, 2013 - Wiley Online Library
Corynebacterium glutamicum is an important industrial organism that is widely used in the
production of amino acids, nucleotides and vitamins. To extend its product spectrum and …

A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome

L Ettwiller, J Buswell, E Yigit, I Schildkraut - BMC genomics, 2016 - Springer
Background The initiating nucleotide found at the 5'end of primary transcripts has a
distinctive triphosphorylated end that distinguishes these transcripts from all other RNA …

Comprehensive quantitative modeling of translation efficiency in a genome‐reduced bacterium

M Weber, A Sogues, E Yus, R Burgos… - Molecular Systems …, 2023 - embopress.org
Translation efficiency has been mainly studied by ribosome profiling, which only provides an
incomplete picture of translation kinetics. Here, we integrated the absolute quantifications of …

The Coding and Noncoding Architecture of the Caulobacter crescentus Genome

JM Schrader, B Zhou, GW Li, K Lasker… - PLoS …, 2014 - journals.plos.org
Caulobacter crescentus undergoes an asymmetric cell division controlled by a genetic
circuit that cycles in space and time. We provide a universal strategy for defining the coding …