Interpretation of differential gene expression results of RNA-seq data: review and integration
Differential gene expression (DGE) analysis is one of the most common applications of RNA-
sequencing (RNA-seq) data. This process allows for the elucidation of differentially …
sequencing (RNA-seq) data. This process allows for the elucidation of differentially …
[HTML][HTML] The sequenced angiosperm genomes and genome databases
Angiosperms, the flowering plants, provide the essential resources for human life, such as
food, energy, oxygen, and materials. They also promoted the evolution of human, animals …
food, energy, oxygen, and materials. They also promoted the evolution of human, animals …
agriGO v2. 0: a GO analysis toolkit for the agricultural community, 2017 update
T Tian, Y Liu, H Yan, Q You, X Yi, Z Du… - Nucleic acids …, 2017 - academic.oup.com
The agriGO platform, which has been serving the scientific community for> 10 years,
specifically focuses on gene ontology (GO) enrichment analyses of plant and agricultural …
specifically focuses on gene ontology (GO) enrichment analyses of plant and agricultural …
Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species
PJ Kersey, JE Allen, A Allot, M Barba… - Nucleic acids …, 2018 - academic.oup.com
Abstract Ensembl Genomes (http://www. ensemblgenomes. org) is an integrating resource
for genome-scale data from non-vertebrate species, complementing the resources for …
for genome-scale data from non-vertebrate species, complementing the resources for …
[HTML][HTML] Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes
Maize is an important crop with a high level of genome diversity and heterosis. The genome
sequence of a typical female line, B73, was previously released. Here, we report a de novo …
sequence of a typical female line, B73, was previously released. Here, we report a de novo …
Expression Atlas: gene and protein expression across multiple studies and organisms
I Papatheodorou, NA Fonseca, M Keays… - Nucleic acids …, 2018 - academic.oup.com
Abstract Expression Atlas (http://www. ebi. ac. uk/gxa) is an added value database that
provides information about gene and protein expression in different species and contexts …
provides information about gene and protein expression in different species and contexts …
[HTML][HTML] Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data
The Wheat@ URGI portal has been developed to provide the international community of
researchers and breeders with access to the bread wheat reference genome sequence …
researchers and breeders with access to the bread wheat reference genome sequence …
Rice SNP-seek database update: new SNPs, indels, and queries
L Mansueto, RR Fuentes, FN Borja… - Nucleic acids …, 2017 - academic.oup.com
We describe updates to the Rice SNP-Seek Database since its first release. We ran a new
SNP-calling pipeline followed by filtering that resulted in complete, base, filtered and core …
SNP-calling pipeline followed by filtering that resulted in complete, base, filtered and core …
[HTML][HTML] The maize W22 genome provides a foundation for functional genomics and transposon biology
The maize W22 inbred has served as a platform for maize genetics since the mid twentieth
century. To streamline maize genome analyses, we have sequenced and de novo …
century. To streamline maize genome analyses, we have sequenced and de novo …
Gramene 2018: unifying comparative genomics and pathway resources for plant research
MK Tello-Ruiz, S Naithani, JC Stein… - Nucleic acids …, 2018 - academic.oup.com
Abstract Gramene (http://www. gramene. org) is a knowledgebase for comparative functional
analysis in major crops and model plant species. The current release,# 54, includes over 1.7 …
analysis in major crops and model plant species. The current release,# 54, includes over 1.7 …