Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea

GL Chadwick, CT Skennerton, R Laso-Pérez… - PLoS …, 2022 - journals.plos.org
The anaerobic oxidation of methane coupled to sulfate reduction is a microbially mediated
process requiring a syntrophic partnership between anaerobic methanotrophic (ANME) …

New insights into the evolutionary history of biological nitrogen fixation

ES Boyd, JW Peters - Frontiers in microbiology, 2013 - frontiersin.org
Nitrogenase, which catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia
(NH3), accounts for roughly half of the bioavailable nitrogen supporting extant life. The …

Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methyl-reducing methanogen

MK Nobu, T Narihiro, K Kuroda, R Mei… - The ISME journal, 2016 - academic.oup.com
The ecophysiology of one candidate methanogen class WSA2 (or Arc I) remains largely
uncharacterized, despite the long history of research on Euryarchaeota methanogenesis. To …

Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes

PC Dos Santos, Z Fang, SW Mason, JC Setubal… - BMC genomics, 2012 - Springer
Background The metabolic capacity for nitrogen fixation is known to be present in several
prokaryotic species scattered across taxonomic groups. Experimental detection of nitrogen …

A comprehensive aligned nifH gene database: a multipurpose tool for studies of nitrogen-fixing bacteria

JC Gaby, DH Buckley - Database, 2014 - academic.oup.com
We describe a nitrogenase gene sequence database that facilitates analysis of the evolution
and ecology of nitrogen-fixing organisms. The database contains 32 954 aligned …

Marine non-cyanobacterial diazotrophs: moving beyond molecular detection

D Bombar, RW Paerl, L Riemann - Trends in microbiology, 2016 - cell.com
The nitrogen input through biological N 2 fixation is essential for life in vast areas of the
global ocean. The belief is that cyanobacteria are the only relevant N 2-fixing (diazotrophic) …

Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME‐1 group

A Meyerdierks, M Kube, I Kostadinov… - Environmental …, 2010 - Wiley Online Library
Microbial consortia mediating the anaerobic oxidation of methane with sulfate are composed
of methanotrophic Archaea (ANME) and Bacteria related to sulfate‐reducing …

Origin and evolution of nitrogen fixation in prokaryotes

HW Pi, JJ Lin, CA Chen, PH Wang… - Molecular Biology …, 2022 - academic.oup.com
The origin of nitrogen fixation is an important issue in evolutionary biology. While nitrogen is
required by all living organisms, only a small fraction of bacteria and archaea can fix …

A global census of nitrogenase diversity

JC Gaby, DH Buckley - Environmental Microbiology, 2011 - Wiley Online Library
The global diversity of nitrogen‐fixing microorganisms was assessed through construction
and analysis of an aligned database of 16 989 nifH sequences. We conclude that the …

Nitrogenase and homologs

Y Hu, MW Ribbe - JBIC Journal of Biological Inorganic Chemistry, 2015 - Springer
Nitrogenase catalyzes biological nitrogen fixation, a key step in the global nitrogen cycle.
Three homologous nitrogenases have been identified to date, along with several structural …