Autoencoder neural networks enable low dimensional structure analyses of microbial growth dynamics
The ability to effectively represent microbiome dynamics is a crucial challenge in their
quantitative analysis and engineering. By using autoencoder neural networks, we show that …
quantitative analysis and engineering. By using autoencoder neural networks, we show that …
Land use alters bacterial growth dynamics in soil
CJ Wattenburger, DH Buckley - Environmental Microbiology, 2023 - Wiley Online Library
Microbial growth and mortality are major determinants of soil carbon cycling. We measured
in situ growth dynamics of individual bacterial taxa in cropped and successional soils in …
in situ growth dynamics of individual bacterial taxa in cropped and successional soils in …
AMiGA: software for automated analysis of microbial growth assays
The analysis of microbial growth is one of the central methods in the field of microbiology.
Microbial growth dynamics can be characterized by meaningful parameters, including …
Microbial growth dynamics can be characterized by meaningful parameters, including …
Private benefit of β-lactamase dictates selection dynamics of combination antibiotic treatment
HR Ma, HZ Xu, K Kim, DJ Anderson, L You - Nature Communications, 2024 - nature.com
Abstract β-lactam antibiotics have been prescribed for most bacterial infections since their
discovery. However, resistance to β-lactams, mediated by β-lactamase (Bla) enzymes such …
discovery. However, resistance to β-lactams, mediated by β-lactamase (Bla) enzymes such …
Drug-dependent growth curve reshaping reveals mechanisms of antifungal resistance in Saccharomyces cerevisiae
Microbial drug resistance is an emerging global challenge. Current drug resistance assays
tend to be simplistic, ignoring complexities of resistance manifestations and mechanisms …
tend to be simplistic, ignoring complexities of resistance manifestations and mechanisms …
Identification and characterization of a potential strain for the production of polyhydroxyalkanoate from glycerol
M Xue, R Huang, W Liu, J Cheng, Y Liu… - Frontiers in …, 2024 - frontiersin.org
While poly (3-hydroxybutyrate)(PHB) holds promise as a bioplastic, its commercial utilization
has been hampered by the high cost of raw materials. However, glycerol emerges as a …
has been hampered by the high cost of raw materials. However, glycerol emerges as a …
Comparative Genomics Identifies Conserved and Variable TAL Effectors in African Strains of the Cotton Pathogen Xanthomonas citri pv. malvacearum
AL Pérez-Quintero, LM Rodriguez-R… - …, 2023 - Am Phytopath Society
Strains of Xanthomonas citri pv. malvacearum cause bacterial blight of cotton, a potentially
serious threat to cotton production worldwide, including in sub-Saharan countries …
serious threat to cotton production worldwide, including in sub-Saharan countries …
Machine learning establishes single-cell calcium dynamics as an early indicator of antibiotic response
Changes in bacterial physiology necessarily precede cell death in response to antibiotics.
Herein we investigate the early disruption of Ca2+ homeostasis as a marker for antibiotic …
Herein we investigate the early disruption of Ca2+ homeostasis as a marker for antibiotic …
Culture of attenuated Salmonella Typhimurium VNP20009 in animal-product-free media does not alter schwannoma growth control
Schwannomas are slow-growing benign peripheral nerve sheath tumors derived from
Schwann-lineage cells that develop in association with NF2-related schwannomatosis (NF2) …
Schwann-lineage cells that develop in association with NF2-related schwannomatosis (NF2) …
Genome sequence of the plant-growth-promoting bacterium Bacillus velezensis EU07
Ö Baysal, DJ Studholme… - Access …, 2024 - microbiologyresearch.org
Many Gram-positive spore-forming rhizobacteria of the genus Bacillus show potential as
biocontrol biopesticides agricultural that promise improved sustainability and ecologically …
biocontrol biopesticides agricultural that promise improved sustainability and ecologically …