Revisiting the comparative phylogeography of unglaciated eastern North America: 15 years of patterns and progress

RA Lyman, CE Edwards - Ecology and Evolution, 2022 - Wiley Online Library
In a landmark comparative phylogeographic study,“Comparative phylogeography of
unglaciated eastern North America,” Soltis et al.(Molecular Ecology, 2006, 15, 4261) …

The mobilome of reptiles: Evolution, structure, and function

S Boissinot, Y Bourgeois, JD Manthey… - … and genome research, 2019 - karger.com
Transposable elements (TE) constitute one of the most variable genomic features among
vertebrates, impacting genome size, structure, and composition. Despite their important role …

Comparative genomics reveals accelerated evolution in conserved pathways during the diversification of anole lizards

M Tollis, ED Hutchins, J Stapley… - Genome Biology and …, 2018 - academic.oup.com
Squamates include all lizards and snakes, and display some of the most diverse and
extreme morphological adaptations among vertebrates. However, compared with birds and …

Phylogenomics and molecular species delimitation reveals great cryptic diversity of leaf-toed geckos (Phyllodactylidae: Phyllodactylus), ancient origins, and …

T Ramírez-Reyes, C Blair, O Flores-Villela… - Molecular Phylogenetics …, 2020 - Elsevier
We utilize the efficient GBS technique to obtain thousands of nuclear loci and SNPs to
reconstruct the evolutionary history of Mexican leaf-toed geckos (Phyllodactylus). Through …

[HTML][HTML] Recalcitrant deep and shallow nodes in Aristolochia (Aristolochiaceae) illuminated using anchored hybrid enrichment

S Wanke, CG Mendoza, S Mueller, AP Guillén… - Molecular Phylogenetics …, 2017 - Elsevier
Recalcitrant relationships are characterized by very short internodes that can be found
among shallow and deep phylogenetic scales all over the tree of life. Adding large amounts …

Disentangling the determinants of transposable elements dynamics in vertebrate genomes using empirical evidences and simulations

Y Bourgeois, RP Ruggiero, I Hariyani… - PLoS genetics, 2020 - journals.plos.org
The interactions between transposable elements (TEs) and their hosts constitute one of the
most profound co-evolutionary processes found in nature. The population dynamics of TEs …

Recent Secondary Contacts, Linked Selection, and Variable Recombination Rates Shape Genomic Diversity in the Model Species Anolis carolinensis

Y Bourgeois, RP Ruggiero, JD Manthey… - Genome Biology and …, 2019 - academic.oup.com
Gaining a better understanding on how selection and neutral processes affect genomic
diversity is essential to gain better insights into the mechanisms driving adaptation and …

LINE Insertion Polymorphisms are Abundant but at Low Frequencies across Populations of Anolis carolinensis

RP Ruggiero, Y Bourgeois, S Boissinot - Frontiers in genetics, 2017 - frontiersin.org
Vertebrate genomes differ considerably in size and structure. Among the features that show
the most variation is the abundance of Long Interspersed Nuclear Elements (LINEs) …

The genetic origins of species boundaries at subtropical and temperate ecoregions in the North American racers (Coluber constrictor)

FT Burbrink, EA Myers - Heredity, 2024 - nature.com
Phylogeographically structured lineages are a common outcome of range-wide population
genetic studies. In the southeastern United States, disconnection between populations …

Independent introductions and sequential founder events shape genetic differentiation and diversity of the invasive green anole (Anolis carolinensis) on Pacific …

SN Michaelides, RM Goodman… - Diversity and …, 2018 - Wiley Online Library
Aim Natural range expansions and human‐mediated colonizations usually involve a small
number of individuals that establish new populations in novel habitats. In both cases …