Synthetic ecology of the human gut microbiota

G Vrancken, AC Gregory, GRB Huys, K Faust… - Nature Reviews …, 2019 - nature.com
Despite recent advances in sequencing and culturing, a deep knowledge of the wiring and
functioning of the human gut ecosystem and its microbiota as a community is still missing. A …

Shining light on human gut bacteriophages

E Guerin, C Hill - Frontiers in cellular and infection microbiology, 2020 - frontiersin.org
The human gut is a complex environment that contains a multitude of microorganisms that
are collectively termed the microbiome. Multiple factors have a role to play in driving the …

No evidence for a common blood microbiome based on a population study of 9,770 healthy humans

CCS Tan, KKK Ko, H Chen, J Liu, M Loh… - Nature …, 2023 - nature.com
Human blood is conventionally considered sterile but recent studies suggest the presence of
a blood microbiome in healthy individuals. Here we characterized the DNA signatures of …

A network approach to elucidate and prioritize microbial dark matter in microbial communities

T Zamkovaya, JS Foster, V de Crécy-Lagard… - The ISME …, 2021 - academic.oup.com
Microbes compose most of the biomass on the planet, yet the majority of taxa remain
uncharacterized. These unknown microbes, often referred to as “microbial dark matter,” …

Metagenomic analysis of microbe-mediated vitamin metabolism in the human gut microbiome

P Das, P Babaei, J Nielsen - BMC genomics, 2019 - Springer
Background Human gut microbial communities have been known to produce vitamins,
which are subsequently absorbed by the host in the large intestine. However, the …

Microbial interaction between the succinate‐utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron

N Ikeyama, T Murakami, A Toyoda, H Mori… - …, 2020 - Wiley Online Library
A large variety of microbes are present in the human gut, some of which are considered to
interact with each other. Most of these interactions involve bacterial metabolites …

The association between intestinal bacteria and allergic diseases—cause or consequence?

P Han, JQ Gu, LS Li, XY Wang, HT Wang… - Frontiers in Cellular …, 2021 - frontiersin.org
The incidence of allergic disorders has been increasing over the past few decades,
especially in industrialized countries. Allergies can affect people of any age. The …

Insight into gut dysbiosis of patients with inflammatory bowel disease and ischemic colitis

RH Dahal, S Kim, YK Kim, ES Kim, J Kim - Frontiers in Microbiology, 2023 - frontiersin.org
The collection of whole microbial communities (bacteria, archaea, fungi, and viruses)
together constitutes the gut microbiome. Diet, age, stress, host genetics, and diseases cause …

[HTML][HTML] Metabolic modeling of human gut microbiota on a genome scale: an overview

P Sen, M Orešič - Metabolites, 2019 - mdpi.com
There is growing interest in the metabolic interplay between the gut microbiome and host
metabolism. Taxonomic and functional profiling of the gut microbiome by next-generation …

Relationship between dental and periodontal health status and the salivary microbiome: bacterial diversity, co-occurrence networks and predictive models

M Relvas, A Regueira-Iglesias, C Balsa-Castro… - Scientific reports, 2021 - nature.com
The present study used 16S rRNA gene amplicon sequencing to assess the impact on
salivary microbiome of different grades of dental and periodontal disease and the …