Synthetic ecology of the human gut microbiota
G Vrancken, AC Gregory, GRB Huys, K Faust… - Nature Reviews …, 2019 - nature.com
Despite recent advances in sequencing and culturing, a deep knowledge of the wiring and
functioning of the human gut ecosystem and its microbiota as a community is still missing. A …
functioning of the human gut ecosystem and its microbiota as a community is still missing. A …
Shining light on human gut bacteriophages
E Guerin, C Hill - Frontiers in cellular and infection microbiology, 2020 - frontiersin.org
The human gut is a complex environment that contains a multitude of microorganisms that
are collectively termed the microbiome. Multiple factors have a role to play in driving the …
are collectively termed the microbiome. Multiple factors have a role to play in driving the …
No evidence for a common blood microbiome based on a population study of 9,770 healthy humans
CCS Tan, KKK Ko, H Chen, J Liu, M Loh… - Nature …, 2023 - nature.com
Human blood is conventionally considered sterile but recent studies suggest the presence of
a blood microbiome in healthy individuals. Here we characterized the DNA signatures of …
a blood microbiome in healthy individuals. Here we characterized the DNA signatures of …
A network approach to elucidate and prioritize microbial dark matter in microbial communities
T Zamkovaya, JS Foster, V de Crécy-Lagard… - The ISME …, 2021 - academic.oup.com
Microbes compose most of the biomass on the planet, yet the majority of taxa remain
uncharacterized. These unknown microbes, often referred to as “microbial dark matter,” …
uncharacterized. These unknown microbes, often referred to as “microbial dark matter,” …
Metagenomic analysis of microbe-mediated vitamin metabolism in the human gut microbiome
Background Human gut microbial communities have been known to produce vitamins,
which are subsequently absorbed by the host in the large intestine. However, the …
which are subsequently absorbed by the host in the large intestine. However, the …
Microbial interaction between the succinate‐utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron
N Ikeyama, T Murakami, A Toyoda, H Mori… - …, 2020 - Wiley Online Library
A large variety of microbes are present in the human gut, some of which are considered to
interact with each other. Most of these interactions involve bacterial metabolites …
interact with each other. Most of these interactions involve bacterial metabolites …
The association between intestinal bacteria and allergic diseases—cause or consequence?
P Han, JQ Gu, LS Li, XY Wang, HT Wang… - Frontiers in Cellular …, 2021 - frontiersin.org
The incidence of allergic disorders has been increasing over the past few decades,
especially in industrialized countries. Allergies can affect people of any age. The …
especially in industrialized countries. Allergies can affect people of any age. The …
Insight into gut dysbiosis of patients with inflammatory bowel disease and ischemic colitis
The collection of whole microbial communities (bacteria, archaea, fungi, and viruses)
together constitutes the gut microbiome. Diet, age, stress, host genetics, and diseases cause …
together constitutes the gut microbiome. Diet, age, stress, host genetics, and diseases cause …
[HTML][HTML] Metabolic modeling of human gut microbiota on a genome scale: an overview
There is growing interest in the metabolic interplay between the gut microbiome and host
metabolism. Taxonomic and functional profiling of the gut microbiome by next-generation …
metabolism. Taxonomic and functional profiling of the gut microbiome by next-generation …
Relationship between dental and periodontal health status and the salivary microbiome: bacterial diversity, co-occurrence networks and predictive models
M Relvas, A Regueira-Iglesias, C Balsa-Castro… - Scientific reports, 2021 - nature.com
The present study used 16S rRNA gene amplicon sequencing to assess the impact on
salivary microbiome of different grades of dental and periodontal disease and the …
salivary microbiome of different grades of dental and periodontal disease and the …