The microbiome of the Black Sea water column analyzed by shotgun and genome centric metagenomics

PJ Cabello-Yeves, C Callieri, A Picazo… - Environmental …, 2021 - Springer
Abstract Background The Black Sea is the largest brackish water body in the world, although
it is connected to the Mediterranean Sea and presents an upper water layer similar to some …

Unveiling the unknown viral world in groundwater

Z Wu, T Liu, Q Chen, T Chen, J Hu, L Sun… - Nature …, 2024 - nature.com
Viruses as the prevailing biological entities are poorly understood in underground realms.
Here, we establish the first metagenomic Groundwater Virome Catalogue (GWVC) …

Genome-resolved metagenomics reveals depth-related patterns of microbial community structure and functions in a highly stratified, AMD overlaying mine tailings

ZH Luo, Q Li, N Chen, LY Tang, B Liao, TT Yang… - Journal of Hazardous …, 2023 - Elsevier
Acid mine drainage (AMD) is a worldwide environmental problem, yet bioremediation is
hampered by a limited knowledge of the reductive microbial processes in the AMD …

[HTML][HTML] Panguiarchaeum symbiosum, a potential hyperthermophilic symbiont in the TACK superphylum

YN Qu, YZ Rao, YL Qi, YX Li, A Li, M Palmer… - Cell reports, 2023 - cell.com
The biology of Korarchaeia remains elusive due to the lack of genome representatives.
Here, we reconstruct 10 closely related metagenome-assembled genomes from hot spring …

[HTML][HTML] Adjusted bacterial cooperation in anammox community to adapt to high ammonium in wastewater treatment plant

Y Feng, L Kong, R Zheng, X Wu, J Zhou, X Xu, S Liu - Water Research X, 2024 - Elsevier
Bacterial cooperation is very important for anammox bacteria which perform low-carbon and
energy-efficient nitrogen removal, yet its variation to adapt to high NH 4+-N concentration in …

Metagenomic characterization of viruses and mobile genetic elements associated with the DPANN archaeal superphylum

Z Wu, S Liu, J Ni - Nature Microbiology, 2024 - nature.com
The archaeal superphylum DPANN (an acronym formed from the initials of the first five phyla
discovered: Diapherotrites, Parvarchaeota, Aenigmarchaeota, Nanohaloarchaeota and …

Biologically mediated release of endogenous N2O and NO2 gases in a hydrothermal, hypoxic subterranean environment

T Martin-Pozas, S Sanchez-Moral, S Cuezva… - Science of the Total …, 2020 - Elsevier
The migration of geogenic gases in continental areas with geothermal activity and active
faults is an important process releasing greenhouse gases (GHG) to the lower troposphere …

Analysis of nearly 3000 archaeal genomes from terrestrial geothermal springs sheds light on interconnected biogeochemical processes

YL Qi, YT Chen, YG Xie, YX Li, YZ Rao, MM Li… - Nature …, 2024 - nature.com
Terrestrial geothermal springs are physicochemically diverse and host abundant
populations of Archaea. However, the diversity, functionality, and geological influences of …

From recharge, to groundwater, to discharge areas in aquifer systems in Quebec (Canada): shaping of microbial diversity and community structure by environmental …

K Villeneuve, M Violette, CS Lazar - Genes, 2022 - mdpi.com
Groundwater recharge and discharge rates and zones are important hydrogeological
characteristics of aquifer systems, yet their impact on the formation of both subterranean and …

Comparative Genomic Insights into the Evolution of Halobacteria-Associated “Candidatus Nanohaloarchaeota”

D Zhao, S Zhang, S Kumar, H Zhou, Q Xue, W Sun… - Msystems, 2022 - Am Soc Microbiol
Members of the phylum “Candidatus Nanohaloarchaeota,” a representative lineage within
the DPANN superphylum, are characterized by their nanosized cells and symbiotic lifestyle …