iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites
Regulation of proteolysis plays a critical role in a myriad of important cellular processes. The
key to better understanding the mechanisms that control this process is to identify the …
key to better understanding the mechanisms that control this process is to identify the …
The state-of-the-art strategies of protein engineering for enzyme stabilization
Q Liu, G Xun, Y Feng - Biotechnology advances, 2019 - Elsevier
Enzymes generated by natural recruitment and protein engineering have greatly contribute
in various sets of applications. However, their insufficient stability is a bottleneck that limit the …
in various sets of applications. However, their insufficient stability is a bottleneck that limit the …
I-TASSER server: new development for protein structure and function predictions
The I-TASSER server (http://zhanglab. ccmb. med. umich. edu/I-TASSER) is an online
resource for automated protein structure prediction and structure-based function annotation …
resource for automated protein structure prediction and structure-based function annotation …
Basic validation procedures for regression models in QSAR and QSPR studies: theory and application
R Kiralj, M Ferreira - Journal of the Brazilian Chemical Society, 2009 - SciELO Brasil
Four quantitative structure-activity relationships (QSAR) and quantitative structure-property
relationship (QSPR) data sets were selected from the literature and used to build regression …
relationship (QSPR) data sets were selected from the literature and used to build regression …
Engineering proteins for thermostability through rigidifying flexible sites
Engineering proteins for thermostability is an exciting and challenging field since it is critical
for broadening the industrial use of recombinant proteins. Thermostability of proteins arises …
for broadening the industrial use of recombinant proteins. Thermostability of proteins arises …
Engineering of flexible loops in enzymes
BM Nestl, B Hauer - Acs Catalysis, 2014 - ACS Publications
From a chemical point of view, enzymes are by far the most structurally complex and
functionally sophisticated molecules known. This is perhaps not surprising, once one …
functionally sophisticated molecules known. This is perhaps not surprising, once one …
Evolutionary dynamics of genome size and content during the adaptive radiation of Heliconiini butterflies
Heliconius butterflies, a speciose genus of Müllerian mimics, represent a classic example of
an adaptive radiation that includes a range of derived dietary, life history, physiological and …
an adaptive radiation that includes a range of derived dietary, life history, physiological and …
Protein elastic network models and the ranges of cooperativity
Elastic network models (ENMs) are entropic models that have demonstrated in many
previous studies their abilities to capture overall the important internal motions, with …
previous studies their abilities to capture overall the important internal motions, with …
PREvaIL, an integrative approach for inferring catalytic residues using sequence, structural, and network features in a machine-learning framework
Determining the catalytic residues in an enzyme is critical to our understanding the
relationship between protein sequence, structure, function, and enhancing our ability to …
relationship between protein sequence, structure, function, and enhancing our ability to …
What makes a protein fold amenable to functional innovation? Fold polarity and stability trade-offs
Protein evolvability includes two elements—robustness (or neutrality, mutations having no
effect) and innovability (mutations readily inducing new functions). How are these two …
effect) and innovability (mutations readily inducing new functions). How are these two …