The genome evolution and low-phosphorus adaptation in white lupin

W Xu, Q Zhang, W Yuan, F Xu… - Nature …, 2020 - nature.com
White lupin (Lupinus albus) is a legume crop that develops cluster roots and has high
phosphorus (P)-use efficiency (PUE) in low-P soils. Here, we assemble the genome of white …

Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats

M Schmid, D Frei, A Patrignani… - Nucleic acids …, 2018 - academic.oup.com
Generating a complete, de novo genome assembly for prokaryotes is often considered a
solved problem. However, we here show that Pseudomonas koreensis P19E3 harbors …

Chromosome-level assembly and analysis of the Thymus genome provide insights into glandular secretory trichome formation and monoterpenoid biosynthesis in …

M Sun, Y Zhang, L Zhu, N Liu, H Bai, G Sun… - Plant …, 2022 - cell.com
Thyme has medicinal and aromatic value because of its potent antimicrobial and antioxidant
properties. However, the absence of a fully sequenced thyme genome limits functional …

Advances in experimental and computational methodologies for the study of microbial-surface interactions at different omics levels

JJ González-Plaza, C Furlan, T Rijavec… - Frontiers in …, 2022 - frontiersin.org
The study of the biological response of microbial cells interacting with natural and synthetic
interfaces has acquired a new dimension with the development and constant progress of …

Chromosome‐level reference genome assembly provides insights into aroma biosynthesis in passion fruit (Passiflora edulis)

D Ma, S Dong, S Zhang, X Wei, Q Xie… - Molecular Ecology …, 2021 - Wiley Online Library
Passion fruit, native to tropical America, is an agriculturally, economically and ornamentally
important fruit plant that is well known for its acid pulp, rich aroma and distinctive flavour …

Chromosome‐level reference genome of Tetrastigma hemsleyanum (Vitaceae) provides insights into genomic evolution and the biosynthesis of phenylpropanoids …

S Zhu, X Zhang, C Ren, X Xu, HP Comes… - The Plant …, 2023 - Wiley Online Library
Here, we present a high‐quality chromosome‐scale genome assembly (2.19 Gb) and
annotation of Tetrastigma hemsleyanum, a perennial herbaceous liana native to subtropical …

The Salmonella enterica Plasmidome as a Reservoir of Antibiotic Resistance

JG Emond-Rheault, J Hamel, J Jeukens, L Freschi… - Microorganisms, 2020 - mdpi.com
The emergence of multidrug-resistant bacterial strains worldwide has become a serious
problem for public health over recent decades. The increase in antimicrobial resistance has …

Chromosome‐level assembly of the mangrove plant Aegiceras corniculatum genome generated through Illumina, PacBio and Hi‐C sequencing technologies

D Ma, Z Guo, Q Ding, Z Zhao, Z Shen… - Molecular Ecology …, 2021 - Wiley Online Library
Aegiceras corniculatum is a major mangrove plant species adapted to waterlogging and
saline conditions, grows in the coastal intertidal zone of tropical and subtropical regions …

Genotype diversity of brucellosis agents isolated from humans and animals in Greece based on whole-genome sequencing

H Brangsch, V Sandalakis, M Babetsa… - BMC Infectious …, 2023 - Springer
Background Brucellosis is a zoonotic disease whose causative agent, Brucella spp., is
endemic in many countries of the Mediterranean basin, including Greece. Although the …

The role of plasmids in carbapenem resistant E. coli in Alameda County, California

N Walas, S Slown, HK Amato, T Lloyd, M Bender… - BMC microbiology, 2023 - Springer
Background Antimicrobial resistant infections continue to be a leading global public health
crisis. Mobile genetic elements, such as plasmids, have been shown to play a major role in …