Antigen presentation in cancer—mechanisms and clinical implications for immunotherapy

K Yang, A Halima, TA Chan - Nature Reviews Clinical Oncology, 2023 - nature.com
Over the past decade, the emergence of effective immunotherapies has revolutionized the
clinical management of many types of cancers. However, long-term durable tumour control …

Therapy sculpts the complex interplay between cancer and the immune system during tumour evolution

K Thol, P Pawlik, N McGranahan - Genome Medicine, 2022 - Springer
Cancer development is an evolutionary process. A key selection pressure is exerted by
therapy, one of the few players in cancer evolution that can be controlled. As such, an …

Informing immunotherapy with multi-omics driven machine learning

Y Li, X Wu, D Fang, Y Luo - npj Digital Medicine, 2024 - nature.com
Progress in sequencing technologies and clinical experiments has revolutionized
immunotherapy on solid and hematologic malignancies. However, the benefits of …

Divergent HLA variations and heterogeneous expression but recurrent HLA loss-of- heterozygosity and common HLA-B and TAP transcriptional silencing across …

WC Lim, ME Marques Da Costa, K Godefroy… - Frontiers in …, 2024 - frontiersin.org
The human leukocyte antigen (HLA) system is a major factor controlling cancer
immunosurveillance and response to immunotherapy, yet its status in pediatric cancers …

SpecHLA enables full-resolution HLA typing from sequencing data

S Wang, M Wang, L Chen, G Pan, Y Wang, SC Li - Cell Reports Methods, 2023 - cell.com
Reconstructing diploid sequences of human leukocyte antigen (HLA) genes, ie, full-
resolution HLA typing, from sequencing data is challenging. The high homogeneity across …

Detecting HLA loss of heterozygosity within a standard diagnostic sequencing workflow for prognostic and therapeutic opportunities

A Lozac'hmeur, T Danek, Q Yang, MG Rosasco… - NPJ Precision …, 2024 - nature.com
To enable interrogation of tumor HLA LOH as a clinical diagnostic for precision oncology, we
developed and validated an assay that detects HLA LOH within the context of an FDA …

Current Landscape of Cancer Immunotherapy: Harnessing the Immune Arsenal to Overcome Immune Evasion

A Mitra, A Kumar, NP Amdare, R Pathak - Biology, 2024 - mdpi.com
Simple Summary Cancer immune evasion poses a significant challenge in developing
effective cancer treatments. The interplay between the immune system and tumors …

The genomic landscape of the immune system in lung cancer: present insights and continuing investigations

M Roshan-Zamir, A Khademolhosseini… - Frontiers in …, 2024 - frontiersin.org
Lung cancer is one of the most prevalent malignancies worldwide, contributing to over a
million cancer-related deaths annually. Despite extensive research investigating the genetic …

Loss of Human Leukocyte Antigen and Immune Escape in Head and Neck Cancer

LGT Morris - The Laryngoscope, 2024 - Wiley Online Library
Objectives/Hypothesis Cancer cells evade recognition by the immune system to survive.
Head and neck squamous cell carcinoma (HNSCC) is characterized by high levels of …

Neoantigen identification: Technological advances and challenges

T Pu, A Peddle, J Zhu, S Tejpar, S Verbandt - Methods in Cell Biology, 2024 - Elsevier
Neoantigens have emerged as promising targets for cutting-edge immunotherapies, such as
cancer vaccines and adoptive cell therapy. These neoantigens are unique to tumors and …