Topology of molecular interaction networks

W Winterbach, PV Mieghem, M Reinders, H Wang… - BMC systems …, 2013 - Springer
Molecular interactions are often represented as network models which have become the
common language of many areas of biology. Graphs serve as convenient mathematical …

Differential network entropy reveals cancer system hallmarks

J West, G Bianconi, S Severini, AE Teschendorff - Scientific reports, 2012 - nature.com
The cellular phenotype is described by a complex network of molecular interactions.
Elucidating network properties that distinguish disease from the healthy cellular state is …

Dynamic modeling and network approaches for omics time course data: overview of computational approaches and applications

Y Liang, A Kelemen - Briefings in bioinformatics, 2018 - academic.oup.com
Inferring networks and dynamics of genes, proteins, cells and other biological entities from
high-throughput biological omics data is a central and challenging issue in computational …

Inferring Virus-Host relationship between HPV and its host Homo sapiens using protein interaction network

QA Farooq, Z Shaukat, T Zhou, S Aiman, W Gong… - Scientific Reports, 2020 - nature.com
Human papilloma virus (HPV) is a serious threat to human life globally with over 100
genotypes including cancer causing high risk HPVs. Study on protein interaction maps of …

Identification of transcription factor-miRNA-lncRNA feed-forward loops in breast cancer subtypes

L Jiang, X Yu, X Ma, H Liu, S Zhou, X Zhou… - … biology and chemistry, 2019 - Elsevier
Previous studies have demonstrated that transcription factor-miRNA-gene feed-forward
loops (FFLs) played important roles in tumorigenesis. However, the lncRNA-involved FFLs …

Systems biology for molecular life sciences and its impact in biomedicine

MÁ Medina - Cellular and molecular life sciences, 2013 - Springer
Modern systems biology is already contributing to a radical transformation of molecular life
sciences and biomedicine, and it is expected to have a real impact in the clinical setting in …

Integrative network-based approach identifies key genetic elements in breast invasive carcinoma

M Hamed, C Spaniol, A Zapp, V Helms - BMC genomics, 2015 - Springer
Background Breast cancer is a genetically heterogeneous type of cancer that belongs to the
most prevalent types with a high mortality rate. Treatment and prognosis of breast cancer …

Analyzing of molecular networks for human diseases and drug discovery

T Hao, Q Wang, L Zhao, D Wu… - Current topics in …, 2018 - ingentaconnect.com
Molecular networks represent the interactions and relations of genes/proteins, and also
encode molecular mechanisms of biological processes, development and diseases. Among …

Combined gene expression and protein interaction analysis of dynamic modularity in glioma prognosis

X Zhang, H Yang, B Gong, C Jiang, L Yang - Journal of neuro-oncology, 2012 - Springer
Because of the variety of factors affecting glioma prognosis, prediction of patient survival is
particularly difficult. Protein–protein interaction (PPI) networks have been considered with …

Computational dynamic approaches for temporal omics data with applications to systems medicine

Y Liang, A Kelemen - BioData mining, 2017 - Springer
Modeling and predicting biological dynamic systems and simultaneously estimating the
kinetic structural and functional parameters are extremely important in systems and …